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SYNPO2 synaptopodin 2 [ Balaenoptera acutorostrata (minke whale) ]

Gene ID: 103001889, updated on 6-Jun-2024

Summary

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Gene symbol
SYNPO2
Gene description
synaptopodin 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Balaenoptera acutorostrata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_06 current mBalAcu1.1 (GCF_949987535.1) 5 NC_080068.1 (121865182..122037408)
101 previous assembly BalAcu1.0 (GCF_000493695.1) Unplaced Scaffold NW_006725798.1 (21144574..21315046, complement)

Chromosome 5 - NC_080068.1Genomic Context describing neighboring genes Neighboring gene SEC24 homolog D, COPII coat complex component Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene uncharacterized LOC130708198 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene ran-specific GTPase-activating protein-like Neighboring gene myozenin 2 Neighboring gene ornithine decarboxylase-like Neighboring gene ubiquitin specific peptidase 53

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptopodin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_949987535.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mBalAcu1.1

Genomic

  1. NC_080068.1 Reference mBalAcu1.1

    Range
    121865182..122037408
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028164036.2 → XP_028019837.2  synaptopodin-2 isoform X2

    UniProtKB/TrEMBL
    A0A452C9S9

  2. XM_007172420.3 → XP_007172482.2  synaptopodin-2 isoform X1

    UniProtKB/TrEMBL
    A0A383ZBR1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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