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ZNF658 zinc finger protein 658 [ Physeter catodon (sperm whale) ]

Gene ID: 102990791, updated on 10-Mar-2024

Summary

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Gene symbol
ZNF658
Gene description
zinc finger protein 658
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human all
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Genomic context

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Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 9 NC_041222.1 (82561510..82579468, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 9 NC_041222.1 (82561510..82579468, complement)

Chromosome 9 - NC_041222.1Genomic Context describing neighboring genes Neighboring gene spermatogenesis-associated protein 31A6-like Neighboring gene uncharacterized LOC114486899 Neighboring gene major facilitator superfamily domain containing 14B Neighboring gene potassium voltage-gated channel subfamily KQT member 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 658

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041222.1 Reference ASM283717v5 Primary Assembly

    Range
    82561510..82579468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024132911.2 → XP_023988679.1  zinc finger protein 658 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9TED3
    Conserved Domains (5) summary
    smart00349
    Location:8 → 73
    KRAB; krueppel associated box
    COG5048
    Location:488 → 859
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:604 → 624
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:462 → 484
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:420 → 443
    zf-H2C2_2; Zinc-finger double domain

  2. XM_024132910.2 → XP_023988678.1  zinc finger protein 658 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9TED3
    Conserved Domains (5) summary
    smart00349
    Location:8 → 73
    KRAB; krueppel associated box
    COG5048
    Location:488 → 859
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:604 → 624
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:462 → 484
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:420 → 443
    zf-H2C2_2; Zinc-finger double domain

  3. XM_055087277.1 → XP_054943252.1  zinc finger protein 658 isoform X2

    UniProtKB/TrEMBL
    A0A9W2WVR1
Nucleotide Protein
Heading Accession and Version

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