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APOA2 apolipoprotein A2 [ Physeter catodon (sperm whale) ]

Gene ID: 102989654, updated on 10-Mar-2024

Summary

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Gene symbol
APOA2
Gene description
apolipoprotein A2
See related
Ensembl:ENSPCTG00005000918
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 4 NC_041217.1 (68190353..68191667)
102 previous assembly ASM283717v2 (GCF_002837175.2) 4 NC_041217.1 (68190353..68191667)

Chromosome 4 - NC_041217.1Genomic Context describing neighboring genes Neighboring gene Purkinje cell protein 4 like 1 Neighboring gene nuclear receptor subfamily 1 group I member 3 Neighboring gene translocase of outer mitochondrial membrane 40 like Neighboring gene Fc epsilon receptor Ig Neighboring gene NADH:ubiquinone oxidoreductase core subunit S2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables apolipoprotein receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cholesterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables high-density lipoprotein particle binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables high-density lipoprotein particle receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylcholine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cholesterol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cholesterol transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in high-density lipoprotein particle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in high-density lipoprotein particle remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipoprotein metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in low-density lipoprotein particle remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride-rich lipoprotein particle remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in blood microparticle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of chylomicron IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spherical high-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of very-low-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apolipoprotein A-II

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041217.1 Reference ASM283717v5 Primary Assembly

    Range
    68190353..68191667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007112272.2 → XP_007112334.1  apolipoprotein A-II

    UniProtKB/TrEMBL
    A0A2Y9F068
    Related
    ENSPCTP00005001206.1, ENSPCTT00005001335.1
    Conserved Domains (1) summary
    pfam04711
    Location:24 → 97
    ApoA-II; Apolipoprotein A-II (ApoA-II)
Nucleotide Protein
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Gene LinkOut

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