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TNFRSF11B TNF receptor superfamily member 11b [ Physeter catodon (sperm whale) ]

Gene ID: 102987438, updated on 10-Mar-2024

Summary

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Gene symbol
TNFRSF11B
Gene description
TNF receptor superfamily member 11b
See related
Ensembl:ENSPCTG00005012744
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 15 NC_041228.1 (19361273..19388406)
102 previous assembly ASM283717v2 (GCF_002837175.2) 15 NC_041228.1 (19361273..19388406)

Chromosome 15 - NC_041228.1Genomic Context describing neighboring genes Neighboring gene mal, T cell differentiation protein 2 Neighboring gene collectin subfamily member 10 Neighboring gene uncharacterized LOC129392848 Neighboring gene sterile alpha motif domain containing 12 Neighboring gene zinc finger C2HC domain-containing protein 1A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor receptor superfamily member 11B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041228.1 Reference ASM283717v5 Primary Assembly

    Range
    19361273..19388406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007118030.2 → XP_007118092.2  tumor necrosis factor receptor superfamily member 11B

    UniProtKB/TrEMBL
    A0A2Y9F9M4
    Related
    ENSPCTP00005017894.1, ENSPCTT00005019726.1
    Conserved Domains (4) summary
    cd00185
    Location:145 → 186
    TNFRSF; CRD2 [structural motif]
    cd10581
    Location:6 → 152
    TNFRSF11B; Tumor necrosis factor receptor superfamily member 11B (TNFRSF11B), also known as Osteoprotegerin (OPG)
    cl14633
    Location:278 → 365
    DD; Death Domain Superfamily of protein-protein interaction domains
    cl22855
    Location:140 → 187
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
Nucleotide Protein
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