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LEMD3 LEM domain containing 3 [ Physeter catodon (sperm whale) ]

Gene ID: 102984657, updated on 10-Mar-2024

Summary

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Gene symbol
LEMD3
Gene description
LEM domain containing 3
See related
Ensembl:ENSPCTG00005002553
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 6 NC_041219.1 (1685948..1777307)
102 previous assembly ASM283717v2 (GCF_002837175.2) 6 NC_041219.1 (1685952..1777307)

Chromosome 6 - NC_041219.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene WNT inhibitory factor 1 Neighboring gene metallothionein-1-like Neighboring gene uncharacterized LOC112064694 Neighboring gene methionine sulfoxide reductase B3 Neighboring gene high mobility group AT-hook 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear envelope organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inner nuclear membrane protein Man1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041219.1 Reference ASM283717v5 Primary Assembly

    Range
    1685948..1777307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024122872.3 → XP_023978640.1  inner nuclear membrane protein Man1 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9SQH6
    Conserved Domains (3) summary
    pfam09402
    Location:545 → 757
    MSC; Man1-Src1p-C-terminal domain
    cl02649
    Location:9 → 51
    LEM; LEM (Lap2/Emerin/Man1) domain found in emerin, lamina-associated polypeptide 2 (LAP2), inner nuclear membrane protein Man1 and similar proteins
    cl17169
    Location:794 → 840
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_028490351.2 → XP_028346152.1  inner nuclear membrane protein Man1 isoform X3

    UniProtKB/TrEMBL
    A0A455BBL0
    Conserved Domains (3) summary
    pfam09402
    Location:547 → 757
    MSC; Man1-Src1p-C-terminal domain
    cl02649
    Location:9 → 51
    LEM; LEM (Lap2/Emerin/Man1) domain found in emerin, lamina-associated polypeptide 2 (LAP2), inner nuclear membrane protein Man1 and similar proteins
    cl17169
    Location:794 → 840
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_024122871.3 → XP_023978639.1  inner nuclear membrane protein Man1 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9SSC6
    Related
    ENSPCTP00005003567.1, ENSPCTT00005003934.1
    Conserved Domains (3) summary
    cd12286
    Location:794 → 885
    RRM_Man1; RNA recognition motif in inner nuclear membrane protein Man1 (Man1) and similar proteins
    pfam09402
    Location:545 → 757
    MSC; Man1-Src1p-C-terminal domain
    cl02649
    Location:9 → 51
    LEM; LEM (Lap2/Emerin/Man1) domain found in emerin, lamina-associated polypeptide 2 (LAP2), inner nuclear membrane protein Man1 and similar proteins
Nucleotide Protein
Heading Accession and Version

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