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ZCCHC3 zinc finger CCHC-type containing 3 [ Physeter catodon (sperm whale) ]

Gene ID: 102982849, updated on 10-Mar-2024

Summary

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Gene symbol
ZCCHC3
Gene description
zinc finger CCHC-type containing 3
See related
Ensembl:ENSPCTG00005015553
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 14 NC_041227.1 (25257867..25260851, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 14 NC_041227.1 (25257867..25260913, complement)

Chromosome 14 - NC_041227.1Genomic Context describing neighboring genes Neighboring gene defensin beta 124 Neighboring gene RRAD and GEM like GTPase 1 Neighboring gene chromosome 14 C20orf96 homolog Neighboring gene defensin beta 129

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activation of innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to exogenous dsRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in detection of virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of RIG-I signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of type I interferon production IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCHC domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041227.1 Reference ASM283717v5 Primary Assembly

    Range
    25257867..25260851 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024128245.3 → XP_023984013.1  zinc finger CCHC domain-containing protein 3

    UniProtKB/TrEMBL
    A0A2Y9T0W5
    Related
    ENSPCTP00005021763.1, ENSPCTT00005023971.1
    Conserved Domains (1) summary
    cl26705
    Location:334 → 387
    AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Nucleotide Protein
Heading Accession and Version

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