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SRRM1 serine and arginine repetitive matrix 1 [ Physeter catodon (sperm whale) ]

Gene ID: 102980515, updated on 10-Mar-2024

Summary

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Gene symbol
SRRM1
Gene description
serine and arginine repetitive matrix 1
See related
Ensembl:ENSPCTG00005006969
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 3 NC_041216.1 (15708112..15737494, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 3 NC_041216.1 (15708806..15737534, complement)

Chromosome 3 - NC_041216.1Genomic Context describing neighboring genes Neighboring gene RUNX family transcription factor 3 Neighboring gene chloride intracellular channel 4 Neighboring gene zinc transporter SLC39A7-like Neighboring gene non-compact myelin associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine repetitive matrix protein 1
Names
serine/arginine repetitive matrix 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041216.1 Reference ASM283717v5 Primary Assembly

    Range
    15708112..15737494 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028487732.2 → XP_028343533.1  serine/arginine repetitive matrix protein 1 isoform X11

    UniProtKB/TrEMBL
    A0A455B680
    Conserved Domains (2) summary
    PHA03307
    Location:573 → 773
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01480
    Location:46 → 115
    PWI; PWI domain

  2. XM_028487729.2 → XP_028343530.1  serine/arginine repetitive matrix protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A455B3M3
    Conserved Domains (2) summary
    PHA03307
    Location:587 → 787
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01480
    Location:46 → 115
    PWI; PWI domain

  3. XM_028487728.2 → XP_028343529.1  serine/arginine repetitive matrix protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A455B4N1
    Conserved Domains (3) summary
    PHA03247
    Location:384 → 713
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:588 → 788
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01480
    Location:46 → 115
    PWI; PWI domain

  4. XM_007121120.4 → XP_007121182.1  serine/arginine repetitive matrix protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A2Y9FEP6
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    pfam10486
    Location:588 → 686
    PI3K_1B_p101; Phosphoinositide 3-kinase gamma adapter protein p101 subunit

  5. XM_028487727.2 → XP_028343528.1  serine/arginine repetitive matrix protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A455B675
    Conserved Domains (2) summary
    PHA03307
    Location:602 → 802
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01480
    Location:46 → 115
    PWI; PWI domain

  6. XM_028487726.2 → XP_028343527.1  serine/arginine repetitive matrix protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A455B409
    Related
    ENSPCTP00005009971.1, ENSPCTT00005011026.1
    Conserved Domains (2) summary
    PHA03307
    Location:603 → 803
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01480
    Location:46 → 115
    PWI; PWI domain

  7. XM_007121117.4 → XP_007121179.1  serine/arginine repetitive matrix protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9FGN4
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    pfam10486
    Location:616 → 714
    PI3K_1B_p101; Phosphoinositide 3-kinase gamma adapter protein p101 subunit

  8. XM_028487725.2 → XP_028343526.1  serine/arginine repetitive matrix protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A455BHU3
    Conserved Domains (2) summary
    PHA03307
    Location:604 → 804
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01480
    Location:46 → 115
    PWI; PWI domain

  9. XM_024125272.3 → XP_023981040.1  serine/arginine repetitive matrix protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9SWW6
    Conserved Domains (3) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:414 → 743
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:618 → 818
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  10. XM_007121118.4 → XP_007121180.1  serine/arginine repetitive matrix protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A2Y9FET0
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    pfam10486
    Location:604 → 702
    PI3K_1B_p101; Phosphoinositide 3-kinase gamma adapter protein p101 subunit

  11. XM_007121116.4 → XP_007121178.1  serine/arginine repetitive matrix protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9FEJ7
    Related
    ENSPCTP00005009912.1, ENSPCTT00005010959.1
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    pfam10486
    Location:618 → 716
    PI3K_1B_p101; Phosphoinositide 3-kinase gamma adapter protein p101 subunit
Nucleotide Protein
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