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RBM12B RNA binding motif protein 12B [ Physeter catodon (sperm whale) ]

Gene ID: 102976794, updated on 10-Mar-2024

Summary

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Gene symbol
RBM12B
Gene description
RNA binding motif protein 12B
See related
Ensembl:ENSPCTG00005008096
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 15 NC_041228.1 (42454241..42461629)
102 previous assembly ASM283717v2 (GCF_002837175.2) 15 NC_041228.1 (42454243..42463871)

Chromosome 15 - NC_041228.1Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase phosphatase catalytic subunit 1 Neighboring gene signal peptidase complex subunit 1-like Neighboring gene transmembrane protein 67 Neighboring gene CBY1 interacting BAR domain containing 1 Neighboring gene uncharacterized LOC102984726

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 12B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041228.1 Reference ASM283717v5 Primary Assembly

    Range
    42454241..42461629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028500202.2 → XP_028356003.1  RNA-binding protein 12B

    UniProtKB/TrEMBL
    A0A2Y9EPS8
    Related
    ENSPCTP00005011370.1, ENSPCTT00005012567.1
    Conserved Domains (8) summary
    PTZ00449
    Location:521 → 747
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    cd12513
    Location:284 → 363
    RRM3_RBM12B; RNA recognition motif 3 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12744
    Location:2 → 80
    RRM1_RBM12B; RNA recognition motif 1 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12746
    Location:156 → 233
    RRM2_RBM12B; RNA recognition motif 2 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12750
    Location:918 → 994
    RRM5_RBM12B; RNA recognition motif 5 in RNA-binding protein 12B (RBM12B) and similar proteins
    pfam04554
    Location:727 → 776
    Extensin_2; Extensin-like region
    cl17169
    Location:400 → 475
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl28061
    Location:744 → 841
    RAP-1; Rhoptry-associated protein 1 (RAP-1)

  2. XM_007106647.4 → XP_007106709.2  RNA-binding protein 12B

    UniProtKB/TrEMBL
    A0A2Y9EPS8
    Conserved Domains (8) summary
    PTZ00449
    Location:521 → 747
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    cd12513
    Location:284 → 363
    RRM3_RBM12B; RNA recognition motif 3 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12744
    Location:2 → 80
    RRM1_RBM12B; RNA recognition motif 1 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12746
    Location:156 → 233
    RRM2_RBM12B; RNA recognition motif 2 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12750
    Location:918 → 994
    RRM5_RBM12B; RNA recognition motif 5 in RNA-binding protein 12B (RBM12B) and similar proteins
    pfam04554
    Location:727 → 776
    Extensin_2; Extensin-like region
    cl17169
    Location:400 → 475
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl28061
    Location:744 → 841
    RAP-1; Rhoptry-associated protein 1 (RAP-1)
Nucleotide Protein
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