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CLDN6 claudin 6 [ Physeter catodon (sperm whale) ]

Gene ID: 102973122, updated on 10-Mar-2024

Summary

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Gene symbol
CLDN6
Gene description
claudin 6
See related
Ensembl:ENSPCTG00005020730
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 14 NC_041227.1 (48889598..48893248, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 14 NC_041227.1 (48889598..48893268, complement)

Chromosome 14 - NC_041227.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114487719 Neighboring gene claudin 9 Neighboring gene TNF receptor superfamily member 12A Neighboring gene host cell factor C1 regulator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
claudin-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041227.1 Reference ASM283717v5 Primary Assembly

    Range
    48889598..48893248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007100024.4 → XP_007100086.2  claudin-6

    UniProtKB/TrEMBL
    A0A2Y9EEL0
    Related
    ENSPCTP00005028935.1, ENSPCTT00005031826.1
    Conserved Domains (1) summary
    cl21598
    Location:4 → 170
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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