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SYNRG synergin gamma [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102947813, updated on 10-Mar-2024

Summary

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Gene symbol
SYNRG
Gene description
synergin gamma
See related
EnsemblRapid:ENSCMYG00015010728
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
28
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 17 NC_051257.2 (7871144..8001726, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 17 NC_051257.1 (17201139..17331915)

Chromosome 17 - NC_051257.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122463199 Neighboring gene acetyl-CoA carboxylase alpha Neighboring gene chromosome 17 C17orf78 homolog Neighboring gene transcriptional adaptor 2A Neighboring gene dual specificity phosphatase 14 Neighboring gene DExD-box helicase 52 Neighboring gene HNF1 homeobox B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of clathrin coat of trans-Golgi network vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synergin gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051257.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    7871144..8001726 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037880637.2 → XP_037736565.1  synergin gamma isoform X7

    Conserved Domains (2) summary
    cd00052
    Location:417 → 468
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    pfam09606
    Location:32 → 214
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  2. XM_037880635.2 → XP_037736563.1  synergin gamma isoform X6

    Conserved Domains (2) summary
    cd00052
    Location:417 → 468
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    pfam09606
    Location:32 → 214
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  3. XM_037880634.2 → XP_037736562.1  synergin gamma isoform X5

    Conserved Domains (2) summary
    cd00052
    Location:417 → 468
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    pfam09606
    Location:32 → 214
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  4. XM_043531253.1 → XP_043387188.1  synergin gamma isoform X14

    Conserved Domains (3) summary
    cd00052
    Location:241 → 292
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    pfam09606
    Location:32 → 126
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl00928
    Location:119 → 153
    dsDNA_bind; Double-stranded DNA-binding domain

  5. XM_043531252.1 → XP_043387187.1  synergin gamma isoform X11

    Conserved Domains (3) summary
    cd00052
    Location:241 → 292
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    pfam09606
    Location:32 → 126
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl00928
    Location:119 → 153
    dsDNA_bind; Double-stranded DNA-binding domain

  6. XM_037880643.1 → XP_037736571.1  synergin gamma isoform X13

    Conserved Domains (2) summary
    cd00052
    Location:241 → 292
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    pfam09606
    Location:32 → 216
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  7. XM_037880641.1 → XP_037736569.1  synergin gamma isoform X10

    Related
    ENSCMYP00015016654.1, ENSCMYT00015020186.1
    Conserved Domains (2) summary
    cd00052
    Location:241 → 292
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    pfam09606
    Location:32 → 216
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  8. XM_043531254.1 → XP_043387189.1  synergin gamma isoform X15

    Related
    ENSCMYP00015016649.1, ENSCMYT00015020182.1
    Conserved Domains (3) summary
    cd00052
    Location:316 → 367
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    pfam09606
    Location:32 → 126
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl00928
    Location:119 → 153
    dsDNA_bind; Double-stranded DNA-binding domain

  9. XM_037880640.1 → XP_037736568.1  synergin gamma isoform X9

    Conserved Domains (2) summary
    cd00052
    Location:316 → 367
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    pfam09606
    Location:32 → 431
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  10. XM_043531251.1 → XP_043387186.1  synergin gamma isoform X4

    Conserved Domains (3) summary
    cd00052
    Location:417 → 468
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    pfam09606
    Location:32 → 126
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl00928
    Location:119 → 153
    dsDNA_bind; Double-stranded DNA-binding domain

  11. XM_043531250.1 → XP_043387185.1  synergin gamma isoform X2

    Conserved Domains (3) summary
    cd00052
    Location:417 → 468
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    pfam09606
    Location:32 → 126
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl00928
    Location:119 → 153
    dsDNA_bind; Double-stranded DNA-binding domain

  12. XM_037880633.1 → XP_037736561.1  synergin gamma isoform X3

    Related
    ENSCMYP00015016665.1, ENSCMYT00015020197.1
    Conserved Domains (2) summary
    cd00052
    Location:417 → 468
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    pfam09606
    Location:32 → 214
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  13. XM_037880632.1 → XP_037736560.1  synergin gamma isoform X1

    Related
    ENSCMYP00015016658.1, ENSCMYT00015020190.1
    Conserved Domains (2) summary
    cd00052
    Location:417 → 468
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    pfam09606
    Location:32 → 214
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  14. XM_037880642.2 → XP_037736570.1  synergin gamma isoform X12

    Conserved Domains (1) summary
    cd00052
    Location:230 → 281
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...

  15. XM_037880639.2 → XP_037736567.1  synergin gamma isoform X8

    Related
    ENSCMYP00015016636.1, ENSCMYT00015020168.1
    Conserved Domains (2) summary
    cd00052
    Location:417 → 468
    EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
    pfam09606
    Location:32 → 214
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

RNA

  1. XR_005222659.2 RNA Sequence

  2. XR_006286341.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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