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Pamr1 peptidase domain containing associated with muscle regeneration 1 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102912043, updated on 10-Mar-2024

Summary

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Gene symbol
Pamr1
Gene description
peptidase domain containing associated with muscle regeneration 1
See related
Ensembl:ENSPEMG00000012941
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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See Pamr1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 4 NC_056011.1 (77639470..77728403)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501239.1 (1208916..1298263, complement)

Chromosome 4 - NC_056011.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L29-like Neighboring gene four-jointed box kinase 1 Neighboring gene solute carrier family 1 member 2 Neighboring gene 40S ribosomal protein S21-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inactive serine protease PAMR1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056011.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    77639470..77728403
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042275807.1 → XP_042131741.1  inactive serine protease PAMR1 isoform X1

    UniProtKB/TrEMBL
    A0A6J0DP41, A0A8C8TI58
    Conserved Domains (4) summary
    cd00033
    Location:280 → 343
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd00041
    Location:128 → 234
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00054
    Location:240 → 272
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00190
    Location:461 → 718
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...

  2. XM_042275808.1 → XP_042131742.1  inactive serine protease PAMR1 isoform X2

    UniProtKB/TrEMBL
    A0A6J0DP41
    Conserved Domains (4) summary
    cd00033
    Location:189 → 252
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd00041
    Location:37 → 143
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00054
    Location:148 → 181
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00190
    Location:370 → 627
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
Nucleotide Protein
Heading Accession and Version

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