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Rfx2 regulatory factor X2 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102912039, updated on 10-Mar-2024

Summary

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Gene symbol
Rfx2
Gene description
regulatory factor X2
See related
Ensembl:ENSPEMG00000021291
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
19
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 22 NC_056029.1 (3940959..4000142, complement)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501210.1 (1329078..1388134, complement)

Chromosome 22 - NC_056029.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121825000 Neighboring gene dihydrouridine synthase 3 like Neighboring gene proline rich 22 Neighboring gene uncharacterized LOC121824989 Neighboring gene uncharacterized LOC121825131 Neighboring gene acyl-CoA synthetase bubblegum family member 2 Neighboring gene long-chain-fatty-acid--CoA ligase ACSBG2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein RFX2
Names
regulatory factor X, 2 (influences HLA class II expression)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056029.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    3940959..4000142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006982273.3 → XP_006982335.1  DNA-binding protein RFX2 isoform X3

    UniProtKB/TrEMBL
    A0A6I9LEJ7
    Related
    ENSPEMP00000024620.1
    Conserved Domains (2) summary
    pfam02257
    Location:166 → 242
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:10 → 148
    RFX1_trans_act; RFX1 transcription activation region

  2. XM_016000839.2 → XP_015856325.1  DNA-binding protein RFX2 isoform X2

    UniProtKB/TrEMBL
    A0A6J0DMK0
    Conserved Domains (2) summary
    pfam02257
    Location:195 → 267
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:10 → 148
    RFX1_trans_act; RFX1 transcription activation region

  3. XM_006982272.3 → XP_006982334.1  DNA-binding protein RFX2 isoform X1

    UniProtKB/TrEMBL
    A0A6I9LPS6
    Related
    ENSPEMP00000024619.1
    Conserved Domains (2) summary
    pfam02257
    Location:195 → 267
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:4 → 148
    RFX1_trans_act; RFX1 transcription activation region

  4. XM_042266889.1 → XP_042122823.1  DNA-binding protein RFX2 isoform X1

    UniProtKB/TrEMBL
    A0A6I9LPS6
    Conserved Domains (2) summary
    pfam02257
    Location:195 → 267
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:4 → 148
    RFX1_trans_act; RFX1 transcription activation region
Nucleotide Protein
Heading Accession and Version

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