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Ogfod1 2-oxoglutarate and iron dependent oxygenase domain containing 1 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102909940, updated on 10-Mar-2024

Summary

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Gene symbol
Ogfod1
Gene description
2-oxoglutarate and iron dependent oxygenase domain containing 1
See related
Ensembl:ENSPEMG00000019931
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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See Ogfod1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 5 NC_056012.1 (10605053..10663711, complement)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501286.1 (839046..866968)

Chromosome 5 - NC_056012.1Genomic Context describing neighboring genes Neighboring gene metallothionein-3 Neighboring gene Bardet-Biedl syndrome 2 Neighboring gene nudix hydrolase 21 Neighboring gene 60S ribosomal protein L17-like Neighboring gene autocrine motility factor receptor Neighboring gene G protein subunit alpha o1 Neighboring gene uncharacterized LOC121829327

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peptidyl-proline dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-proline hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of translational termination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase OGFOD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056012.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    10605053..10663711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042277303.1 → XP_042133237.1  prolyl 3-hydroxylase OGFOD1 isoform X2

    UniProtKB/TrEMBL
    A0A6J0DUT2
    Conserved Domains (1) summary
    pfam13661
    Location:84 → 181
    2OG-FeII_Oxy_4; 2OG-Fe(II) oxygenase superfamily

  2. XM_006985205.3 → XP_006985267.1  prolyl 3-hydroxylase OGFOD1 isoform X1

    UniProtKB/TrEMBL
    A0A6I9LJU7, A0A6J0DUT2
    Related
    ENSPEMP00000022617.1
    Conserved Domains (2) summary
    smart00702
    Location:72 → 238
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    cl21496
    Location:262 → 521
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

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