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Csf1 colony stimulating factor 1 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102906508, updated on 10-Mar-2024

Summary

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Gene symbol
Csf1
Gene description
colony stimulating factor 1
See related
Ensembl:ENSPEMG00000007138
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 6 NC_056013.1 (83687845..83706711, complement)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501156.1 (3626820..3645949)

Chromosome 6 - NC_056013.1Genomic Context describing neighboring genes Neighboring gene striatin interacting protein 1 Neighboring gene adenosylhomocysteinase like 1 Neighboring gene uncharacterized LOC107401498 Neighboring gene uncharacterized LOC121830288 Neighboring gene EPS8 signaling adaptor L3 Neighboring gene glutathione S-transferase mu 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in osteoclast differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of macrophage differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
macrophage colony-stimulating factor 1
Names
colony stimulating factor 1 (macrophage)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056013.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    83687845..83706711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006979498.3 → XP_006979560.1  macrophage colony-stimulating factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A6I9L983
    Conserved Domains (1) summary
    pfam05337
    Location:1 → 257
    CSF-1; Macrophage colony stimulating factor-1 (CSF-1)

  2. XM_006979496.3 → XP_006979558.1  macrophage colony-stimulating factor 1 isoform X1

    See identical proteins and their annotated locations for XP_006979558.1

    UniProtKB/TrEMBL
    A0A6I9LJ22
    Related
    ENSPEMP00000004755.1
    Conserved Domains (2) summary
    PRK08691
    Location:214 → 418
    PRK08691; DNA polymerase III subunits gamma and tau; Validated
    pfam05337
    Location:41 → 180
    CSF-1; Macrophage colony stimulating factor-1 (CSF-1)

  3. XM_042279691.1 → XP_042135625.1  macrophage colony-stimulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I9LJ22
    Conserved Domains (2) summary
    PRK08691
    Location:214 → 418
    PRK08691; DNA polymerase III subunits gamma and tau; Validated
    pfam05337
    Location:41 → 180
    CSF-1; Macrophage colony stimulating factor-1 (CSF-1)
Nucleotide Protein
Heading Accession and Version

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