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TOM1L1 target of myb1 like 1 membrane trafficking protein [ Pteropus alecto (black flying fox) ]

Gene ID: 102897398, updated on 30-Mar-2024

Summary

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Gene symbol
TOM1L1
Gene description
target of myb1 like 1 membrane trafficking protein
Locus tag
PAL_GLEAN10019748
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus alecto
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See TOM1L1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006443570.1 (8583142..8630894)

NW_006443570.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L32 pseudogene Neighboring gene 5S ribosomal RNA Neighboring gene cytochrome c oxidase assembly protein COX11, mitochondrial Neighboring gene syntaxin binding protein 4 Neighboring gene HLF transcription factor, PAR bZIP family member

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006443570 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TOM1-like protein 1
Names
target of myb1 (chicken)-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32557v1 Primary Assembly

Genomic

  1. NW_006443570.1 Reference ASM32557v1 Primary Assembly

    Range
    8583142..8630894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006924849.3 → XP_006924911.1  TOM1-like protein 1 isoform X1

    UniProtKB/TrEMBL
    L5JQI5
    Conserved Domains (2) summary
    cd03565
    Location:14 → 154
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14237
    Location:199 → 290
    GAT_TM1L1; GAT domain found in target of Myb-like protein 1 (Tom1L1)

  2. XM_025041776.1 → XP_024897544.1  TOM1-like protein 1 isoform X2

    UniProtKB/TrEMBL
    L5JQI5
    Conserved Domains (2) summary
    cd14237
    Location:189 → 280
    GAT_TM1L1; GAT domain found in target of Myb-like protein 1 (Tom1L1)
    cl02544
    Location:8 → 144
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...
Nucleotide Protein
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