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PTBP1 polypyrimidine tract binding protein 1 [ Pteropus alecto (black flying fox) ]

Gene ID: 102897134, updated on 30-Mar-2024

Summary

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Gene symbol
PTBP1
Gene description
polypyrimidine tract binding protein 1
Locus tag
PAL_GLEAN10005906
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus alecto
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006429782.1 (260090..272166)

NW_006429782.1Genomic Context describing neighboring genes Neighboring gene paralemmin Neighboring gene mitotic spindle positioning Neighboring gene 5S ribosomal RNA Neighboring gene phospholipid phosphatase related 3 Neighboring gene myeloblastin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006429782 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypyrimidine tract-binding protein 1
Names
Polypyrimidine tract-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32557v1 Primary Assembly

Genomic

  1. NW_006429782.1 Reference ASM32557v1 Primary Assembly

    Range
    260090..272166
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006904037.3 → XP_006904099.1  polypyrimidine tract-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    L5L897
    Conserved Domains (5) summary
    cd12693
    Location:181 → 276
    RRM2_PTBP1_like; RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins
    cd12695
    Location:338 → 430
    RRM3_PTBP1; RNA recognition motif 3 in vertebrate polypyrimidine tract-binding protein 1 (PTB)
    cd12777
    Location:59 → 139
    RRM1_PTBP1; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein 1 (PTB)
    TIGR01649
    Location:57 → 531
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:451 → 531
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_006904036.3 → XP_006904098.1  polypyrimidine tract-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    L5L897
    Conserved Domains (5) summary
    cd12693
    Location:181 → 276
    RRM2_PTBP1_like; RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins
    cd12695
    Location:364 → 456
    RRM3_PTBP1; RNA recognition motif 3 in vertebrate polypyrimidine tract-binding protein 1 (PTB)
    cd12777
    Location:59 → 139
    RRM1_PTBP1; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein 1 (PTB)
    TIGR01649
    Location:57 → 557
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:477 → 557
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_025040500.1 → XP_024896268.1  polypyrimidine tract-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    L5L897
    Conserved Domains (1) summary
    TIGR01649
    Location:27 → 527
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
Nucleotide Protein
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