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TRPV4 transient receptor potential cation channel subfamily V member 4 [ Elephantulus edwardii (Cape elephant shrew) ]

Gene ID: 102874895, updated on 10-Mar-2024

Summary

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Gene symbol
TRPV4
Gene description
transient receptor potential cation channel subfamily V member 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Elephantulus edwardii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Macroscelidea; Macroscelididae; Elephantulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current EleEdw1.0 (GCF_000299155.1) Unplaced Scaffold NW_006399901.1 (6461672..6503757, complement)

NW_006399901.1Genomic Context describing neighboring genes Neighboring gene nucleoporin 50kDa pseudogene Neighboring gene family with sequence similarity 222 member A Neighboring gene small nuclear ribonucleoprotein Sm D2-like Neighboring gene 40S ribosomal protein S15a-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006399901 unplaced scaffold reference EleEdw1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in osmosensory signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transient receptor potential cation channel subfamily V member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Elephantulus edwardii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EleEdw1.0

Genomic

  1. NW_006399901.1 Reference EleEdw1.0

    Range
    6461672..6503757 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006894837.1 → XP_006894899.1  transient receptor potential cation channel subfamily V member 4

    Conserved Domains (5) summary
    cd00204
    Location:204 → 356
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00520
    Location:524 → 696
    Ion_trans; Ion transport protein
    pfam09685
    Location:515 → 561
    DUF4870; Domain of unknown function (DUF4870)
    pfam12796
    Location:169 → 284
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:203 → 234
    ANK; ANK repeat [structural motif]

  2. XM_006894840.1 → XP_006894902.1  transient receptor potential cation channel subfamily V member 4

    Conserved Domains (4) summary
    cd00204
    Location:189 → 336
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:124 → 692
    trp; transient-receptor-potential calcium channel protein
    pfam09685
    Location:442 → 488
    DUF4870; Domain of unknown function (DUF4870)
    sd00045
    Location:191 → 231
    ANK; ANK repeat [structural motif]

  3. XM_006894838.1 → XP_006894900.1  transient receptor potential cation channel subfamily V member 4

    Conserved Domains (5) summary
    cd00204
    Location:189 → 343
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00520
    Location:511 → 683
    Ion_trans; Ion transport protein
    pfam09685
    Location:502 → 548
    DUF4870; Domain of unknown function (DUF4870)
    pfam12796
    Location:242 → 347
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:191 → 231
    ANK; ANK repeat [structural motif]

  4. XM_006894839.1 → XP_006894901.1  transient receptor potential cation channel subfamily V member 4

    Conserved Domains (5) summary
    cd00204
    Location:238 → 383
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00520
    Location:498 → 670
    Ion_trans; Ion transport protein
    pfam09685
    Location:489 → 535
    DUF4870; Domain of unknown function (DUF4870)
    pfam12796
    Location:203 → 318
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:237 → 268
    ANK; ANK repeat [structural motif]

  5. XM_006894836.1 → XP_006894898.1  transient receptor potential cation channel subfamily V member 4

    Conserved Domains (5) summary
    cd00204
    Location:238 → 390
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00520
    Location:558 → 730
    Ion_trans; Ion transport protein
    pfam09685
    Location:549 → 595
    DUF4870; Domain of unknown function (DUF4870)
    pfam12796
    Location:203 → 318
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:237 → 268
    ANK; ANK repeat [structural motif]
Nucleotide Protein
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