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NPAS3 neuronal PAS domain protein 3 [ Chrysochloris asiatica (Cape golden mole) ]

Gene ID: 102827077, updated on 10-Mar-2024

Summary

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Gene symbol
NPAS3
Gene description
neuronal PAS domain protein 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysochloris asiatica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Chrysochloridae; Chrysochlorinae; Chrysochloris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ChrAsi1.0 (GCF_000296735.1) Unplaced Scaffold NW_006408535.1 (14043357..15177397, complement)

NW_006408535.1Genomic Context describing neighboring genes Neighboring gene dysbindin-like Neighboring gene egl-9 family hypoxia inducible factor 3 Neighboring gene ubiquitin carboxyl-terminal hydrolase 21-like Neighboring gene A-kinase anchoring protein 6 Neighboring gene ribosomal protein L17 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006408535 unplaced scaffold reference ChrAsi1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuronal PAS domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysochloris asiatica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChrAsi1.0 Primary Assembly

Genomic

  1. NW_006408535.1 Reference ChrAsi1.0 Primary Assembly

    Range
    14043357..15177397 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006835502.1 → XP_006835565.1  neuronal PAS domain-containing protein 3

    UniProtKB/TrEMBL
    A0A9B0WJ58
    Conserved Domains (5) summary
    smart00091
    Location:155 → 213
    PAS; PAS domain
    cd00083
    Location:55 → 112
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:334 → 416
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:155 → 213
    PAS; PAS fold
    pfam08447
    Location:346 → 433
    PAS_3; PAS fold
Nucleotide Protein
Heading Accession and Version

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