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PRDM2 PR/SET domain 2 [ Myotis davidii ]

Gene ID: 102760935, updated on 30-Mar-2024

Summary

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Gene symbol
PRDM2
Gene description
PR/SET domain 2
Locus tag
MDA_GLEAN10024347
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis davidii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current ASM32734v1 (GCF_000327345.1) Unplaced Scaffold NW_006293088.1 (4257013..4354616, complement)

NW_006293088.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107183591 Neighboring gene putative uncharacterized protein C1orf196 Neighboring gene podoplanin Neighboring gene leucine rich repeat containing 38

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006293088.1 Unplaced Scaffold Reference ASM32734v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 2
Names
PR domain containing 2, with ZNF domain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis davidii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32734v1

Genomic

  1. NW_006293088.1 Reference ASM32734v1

    Range
    4257013..4354616 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015565872.1 → XP_015421358.1  PR domain zinc finger protein 2 isoform X7

    Conserved Domains (1) summary
    smart00317
    Location:28 → 147
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

  2. XM_015565870.1 → XP_015421356.1  PR domain zinc finger protein 2 isoform X4

    UniProtKB/TrEMBL
    L5LPQ8
    Conserved Domains (3) summary
    smart00317
    Location:28 → 147
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    sd00017
    Location:1087 → 1107
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:313 → 335
    zf-C2H2; Zinc finger, C2H2 type

  3. XM_015565867.1 → XP_015421353.1  PR domain zinc finger protein 2 isoform X1

    UniProtKB/TrEMBL
    L5LPQ8
    Conserved Domains (4) summary
    smart00317
    Location:28 → 147
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    sd00017
    Location:1124 → 1144
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:350 → 372
    zf-C2H2; Zinc finger, C2H2 type
    pfam13894
    Location:473 → 496
    zf-C2H2_4; C2H2-type zinc finger

  4. XM_015565871.1 → XP_015421357.1  PR domain zinc finger protein 2 isoform X5

    UniProtKB/TrEMBL
    L5LPQ8
    Conserved Domains (3) summary
    smart00317
    Location:1 → 62
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    sd00017
    Location:1039 → 1059
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:265 → 287
    zf-C2H2; Zinc finger, C2H2 type

  5. XM_006766704.2 → XP_006766767.1  PR domain zinc finger protein 2 isoform X6

    See identical proteins and their annotated locations for XP_006766767.1

    UniProtKB/TrEMBL
    L5LPQ8
    Conserved Domains (2) summary
    sd00017
    Location:923 → 943
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:149 → 171
    zf-C2H2; Zinc finger, C2H2 type

  6. XM_006766703.2 → XP_006766766.1  PR domain zinc finger protein 2 isoform X6

    See identical proteins and their annotated locations for XP_006766766.1

    UniProtKB/TrEMBL
    L5LPQ8
    Conserved Domains (2) summary
    sd00017
    Location:923 → 943
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:149 → 171
    zf-C2H2; Zinc finger, C2H2 type

  7. XM_006766705.2 → XP_006766768.1  PR domain zinc finger protein 2 isoform X6

    See identical proteins and their annotated locations for XP_006766768.1

    UniProtKB/TrEMBL
    L5LPQ8
    Conserved Domains (2) summary
    sd00017
    Location:923 → 943
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:149 → 171
    zf-C2H2; Zinc finger, C2H2 type

  8. XM_015565868.1 → XP_015421354.1  PR domain zinc finger protein 2 isoform X2

    UniProtKB/TrEMBL
    L5LPQ8
    Conserved Domains (5) summary
    smart00317
    Location:28 → 147
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    sd00017
    Location:1124 → 1144
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:352 → 372
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:350 → 372
    zf-C2H2; Zinc finger, C2H2 type
    pfam13894
    Location:473 → 496
    zf-C2H2_4; C2H2-type zinc finger

  9. XM_015565869.1 → XP_015421355.1  PR domain zinc finger protein 2 isoform X3

    UniProtKB/TrEMBL
    L5LPQ8
    Conserved Domains (5) summary
    smart00317
    Location:28 → 147
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    sd00017
    Location:1124 → 1144
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:352 → 372
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:350 → 372
    zf-C2H2; Zinc finger, C2H2 type
    pfam13894
    Location:473 → 496
    zf-C2H2_4; C2H2-type zinc finger
Nucleotide Protein
Heading Accession and Version

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