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marchf8 membrane-associated ring finger (C3HC4) 8 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102698004, updated on 10-Mar-2024

Summary

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Gene symbol
marchf8
Gene description
membrane-associated ring finger (C3HC4) 8
See related
Ensembl:ENSLOCG00000009384
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Also known as
march8
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG5
Exon count:
12
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG5 NC_023183.1 (18368151..18462614, complement)

Linkage Group LG5 - NC_023183.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107077355 Neighboring gene solute carrier family 25 member 16 Neighboring gene arachidonate 5-lipoxygenase a Neighboring gene zinc finger, AN1-type domain 4 Neighboring gene WASH complex subunit 2C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023183.1 Chromosome LG5 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of peptide antigen via MHC class II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase MARCH8
Names
membrane associated ring-CH-type finger 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023183.1 Reference LepOcu1 Primary Assembly

    Range
    18368151..18462614 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015346866.1 → XP_015202352.1  E3 ubiquitin-protein ligase MARCH8 isoform X1

    UniProtKB/TrEMBL
    W5MSW8
    Conserved Domains (1) summary
    smart00744
    Location:371 → 419
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

  2. XM_015346868.1 → XP_015202354.1  E3 ubiquitin-protein ligase MARCH8 isoform X2

    UniProtKB/TrEMBL
    W5MSW8
    Conserved Domains (1) summary
    smart00744
    Location:371 → 419
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

  3. XM_015346865.1 → XP_015202351.1  E3 ubiquitin-protein ligase MARCH8 isoform X1

    UniProtKB/TrEMBL
    W5MSW8
    Conserved Domains (1) summary
    smart00744
    Location:371 → 419
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

  4. XM_015346872.1 → XP_015202358.1  E3 ubiquitin-protein ligase MARCH8 isoform X6

    UniProtKB/TrEMBL
    W5MSW8
    Related
    ENSLOCP00000011477.1, ENSLOCT00000011494.1
    Conserved Domains (1) summary
    smart00744
    Location:365 → 413
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

  5. XM_015346870.1 → XP_015202356.1  E3 ubiquitin-protein ligase MARCH8 isoform X4

    UniProtKB/TrEMBL
    W5MSW8
    Conserved Domains (1) summary
    smart00744
    Location:365 → 413
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

  6. XM_015346871.1 → XP_015202357.1  E3 ubiquitin-protein ligase MARCH8 isoform X5

    UniProtKB/TrEMBL
    W5MSW8
    Related
    ENSLOCP00000011457.1, ENSLOCT00000011474.1
    Conserved Domains (1) summary
    smart00744
    Location:371 → 419
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

  7. XM_015346869.1 → XP_015202355.1  E3 ubiquitin-protein ligase MARCH8 isoform X3

    UniProtKB/TrEMBL
    W5MSW8
    Related
    ENSLOCP00000011449.1, ENSLOCT00000011466.1
    Conserved Domains (1) summary
    smart00744
    Location:371 → 419
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

  8. XM_015346874.1 → XP_015202360.1  E3 ubiquitin-protein ligase MARCH8 isoform X8

    Conserved Domains (1) summary
    smart00744
    Location:81 → 129
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

  9. XM_015346875.1 → XP_015202361.1  E3 ubiquitin-protein ligase MARCH8 isoform X9

    Conserved Domains (1) summary
    smart00744
    Location:81 → 129
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

  10. XM_015346876.1 → XP_015202362.1  E3 ubiquitin-protein ligase MARCH8 isoform X10

    UniProtKB/TrEMBL
    W5MSV6
    Related
    ENSLOCP00000011465.1, ENSLOCT00000011482.1
    Conserved Domains (1) summary
    smart00744
    Location:81 → 129
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

  11. XM_006630449.2 → XP_006630512.1  E3 ubiquitin-protein ligase MARCH8 isoform X11

    Conserved Domains (1) summary
    smart00744
    Location:75 → 123
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

  12. XM_015346877.1 → XP_015202363.1  E3 ubiquitin-protein ligase MARCH8 isoform X12

    Conserved Domains (1) summary
    smart00744
    Location:75 → 123
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

  13. XM_015346867.1 → XP_015202353.1  E3 ubiquitin-protein ligase MARCH8 isoform X1

    UniProtKB/TrEMBL
    W5MSW8
    Conserved Domains (1) summary
    smart00744
    Location:371 → 419
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

  14. XM_015346873.1 → XP_015202359.1  E3 ubiquitin-protein ligase MARCH8 isoform X7

    UniProtKB/TrEMBL
    W5MSW8
    Conserved Domains (1) summary
    smart00744
    Location:342 → 390
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
Nucleotide Protein
Heading Accession and Version

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