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srsf7 serine and arginine rich splicing factor 7 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102692640, updated on 2-Nov-2023

Summary

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Gene symbol
srsf7
Gene description
serine and arginine rich splicing factor 7
See related
Ensembl:ENSLOCG00000015778
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
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Genomic context

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Location:
chromosome: LG16
Exon count:
9
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG16 NC_023194.1 (4451801..4460165)

Linkage Group LG16 - NC_023194.1Genomic Context describing neighboring genes Neighboring gene DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 Neighboring gene gem (nuclear organelle) associated protein 6 Neighboring gene galactose mutarotase Neighboring gene uncharacterized LOC107079333 Neighboring gene heterogeneous nuclear ribonucleoprotein L like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023194.1 Chromosome LG16 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich splicing factor 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023194.1 Reference LepOcu1 Primary Assembly

    Range
    4451801..4460165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015362597.1 → XP_015218083.1  serine/arginine-rich splicing factor 7 isoform X1

    Conserved Domains (3) summary
    COG0724
    Location:12 → 116
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12646
    Location:30 → 106
    RRM_SRSF7; RNA recognition motif in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)
    pfam00098
    Location:124 → 137
    zf-CCHC; Zinc knuckle

  2. XM_006638538.2 → XP_006638601.1  serine/arginine-rich splicing factor 7 isoform X2

    UniProtKB/TrEMBL
    W5NFL6
    Related
    ENSLOCP00000019425.1, ENSLOCT00000019457.1
    Conserved Domains (2) summary
    COG0724
    Location:10 → 98
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12646
    Location:12 → 88
    RRM_SRSF7; RNA recognition motif in vertebrate serine/arginine-rich splicing factor 7 (SRSF7)

  3. XM_015362599.1 → XP_015218085.1  serine/arginine-rich splicing factor 7 isoform X3

    Conserved Domains (1) summary
    cl17169
    Location:5 → 24
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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