U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pparg peroxisome proliferator-activated receptor gamma [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102692076, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
pparg
Gene description
peroxisome proliferator-activated receptor gamma
See related
Ensembl:ENSLOCG00000013954
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: LG5
Exon count:
8
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG5 NC_023183.1 (46943334..46961860)

Linkage Group LG5 - NC_023183.1Genomic Context describing neighboring genes Neighboring gene TAM41 mitochondrial translocator assembly and maintenance homolog Neighboring gene synapsin IIb Neighboring gene TIMP metallopeptidase inhibitor 4 Neighboring gene TSEN2 tRNA splicing endonuclease subunit Neighboring gene MKRN2 opposite strand

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_023183.1 Chromosome LG5 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hormone-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
peroxisome proliferator-activated receptor gamma

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023183.1 Reference LepOcu1 Primary Assembly

    Range
    46943334..46961860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006631031.2 → XP_006631094.2  peroxisome proliferator-activated receptor gamma

    UniProtKB/TrEMBL
    W5N992
    Related
    ENSLOCP00000017201.1, ENSLOCT00000017232.1
    Conserved Domains (3) summary
    cd06932
    Location:229 → 505
    NR_LBD_PPAR; The ligand binding domain of peroxisome proliferator-activated receptors
    cd06965
    Location:130 → 213
    NR_DBD_Ppar; DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers
    pfam12577
    Location:23 → 100
    PPARgamma_N; PPAR gamma N-terminal region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.