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utp3 UTP3 small subunit processome component [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102690366, updated on 10-Mar-2024

Summary

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Gene symbol
utp3
Gene description
UTP3 small subunit processome component
See related
Ensembl:ENSLOCG00000001449
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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See utp3 in Genome Data Viewer
Location:
chromosome: LG25
Exon count:
13
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG25 NC_023203.1 (2853485..2888010)

Linkage Group LG25 - NC_023203.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107075510 Neighboring gene uncharacterized LOC107075511 Neighboring gene phosphopantothenoylcysteine synthetase Neighboring gene zinc finger, MYND-type containing 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023203.1 Chromosome LG25 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
something about silencing protein 10
Names
UTP3, small subunit processome component homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023203.1 Reference LepOcu1 Primary Assembly

    Range
    2853485..2888010
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015336822.1 → XP_015192308.1  something about silencing protein 10

    UniProtKB/TrEMBL
    W5LZV8
    Related
    ENSLOCP00000001665.1, ENSLOCT00000001670.1
    Conserved Domains (2) summary
    pfam04000
    Location:132 → 211
    Sas10_Utp3; Sas10/Utp3/C1D family
    pfam09368
    Location:310 → 383
    Sas10; Sas10 C-terminal domain
Nucleotide Protein
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Gene LinkOut

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