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zfand6 zinc finger, AN1-type domain 6 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102686198, updated on 10-Mar-2024

Summary

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Gene symbol
zfand6
Gene description
zinc finger, AN1-type domain 6
See related
Ensembl:ENSLOCG00000012770
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG3
Exon count:
11
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG3 NC_023181.1 (37655838..37673452)

Linkage Group LG3 - NC_023181.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107076882 Neighboring gene membrane integral NOTCH2 associated receptor 1 Neighboring gene 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) Neighboring gene uncharacterized LOC107076872 Neighboring gene fumarylacetoacetate hydrolase (fumarylacetoacetase)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023181.1 Chromosome LG3 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein targeting to peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AN1-type zinc finger protein 6
Names
zinc finger AN1-type containing 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023181.1 Reference LepOcu1 Primary Assembly

    Range
    37655838..37673452
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015342894.1 → XP_015198380.1  AN1-type zinc finger protein 6 isoform X1

    Conserved Domains (2) summary
    smart00154
    Location:238 → 275
    ZnF_AN1; AN1-like Zinc finger
    pfam01754
    Location:32 → 55
    zf-A20; A20-like zinc finger

  2. XM_015342898.1 → XP_015198384.1  AN1-type zinc finger protein 6 isoform X2

    Conserved Domains (2) summary
    smart00154
    Location:218 → 255
    ZnF_AN1; AN1-like Zinc finger
    pfam01754
    Location:12 → 35
    zf-A20; A20-like zinc finger

  3. XM_015342890.1 → XP_015198376.1  AN1-type zinc finger protein 6 isoform X1

    Conserved Domains (2) summary
    smart00154
    Location:238 → 275
    ZnF_AN1; AN1-like Zinc finger
    pfam01754
    Location:32 → 55
    zf-A20; A20-like zinc finger

  4. XM_015342897.1 → XP_015198383.1  AN1-type zinc finger protein 6 isoform X2

    Conserved Domains (2) summary
    smart00154
    Location:218 → 255
    ZnF_AN1; AN1-like Zinc finger
    pfam01754
    Location:12 → 35
    zf-A20; A20-like zinc finger

  5. XM_015342900.1 → XP_015198386.1  AN1-type zinc finger protein 6 isoform X2

    Conserved Domains (2) summary
    smart00154
    Location:218 → 255
    ZnF_AN1; AN1-like Zinc finger
    pfam01754
    Location:12 → 35
    zf-A20; A20-like zinc finger

  6. XM_015342896.1 → XP_015198382.1  AN1-type zinc finger protein 6 isoform X2

    Conserved Domains (2) summary
    smart00154
    Location:218 → 255
    ZnF_AN1; AN1-like Zinc finger
    pfam01754
    Location:12 → 35
    zf-A20; A20-like zinc finger

  7. XM_015342893.1 → XP_015198379.1  AN1-type zinc finger protein 6 isoform X1

    Conserved Domains (2) summary
    smart00154
    Location:238 → 275
    ZnF_AN1; AN1-like Zinc finger
    pfam01754
    Location:32 → 55
    zf-A20; A20-like zinc finger

  8. XM_015342895.1 → XP_015198381.1  AN1-type zinc finger protein 6 isoform X1

    Conserved Domains (2) summary
    smart00154
    Location:238 → 275
    ZnF_AN1; AN1-like Zinc finger
    pfam01754
    Location:32 → 55
    zf-A20; A20-like zinc finger

  9. XM_015342899.1 → XP_015198385.1  AN1-type zinc finger protein 6 isoform X2

    Conserved Domains (2) summary
    smart00154
    Location:218 → 255
    ZnF_AN1; AN1-like Zinc finger
    pfam01754
    Location:12 → 35
    zf-A20; A20-like zinc finger

  10. XM_015342891.1 → XP_015198377.1  AN1-type zinc finger protein 6 isoform X1

    Conserved Domains (2) summary
    smart00154
    Location:238 → 275
    ZnF_AN1; AN1-like Zinc finger
    pfam01754
    Location:32 → 55
    zf-A20; A20-like zinc finger

  11. XM_006628618.2 → XP_006628681.2  AN1-type zinc finger protein 6 isoform X3

    UniProtKB/TrEMBL
    W5N503
    Related
    ENSLOCP00000015712.1, ENSLOCT00000015742.1
    Conserved Domains (2) summary
    smart00154
    Location:172 → 209
    ZnF_AN1; AN1-like Zinc finger
    pfam01754
    Location:32 → 55
    zf-A20; A20-like zinc finger
Nucleotide Protein
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