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ptafr platelet-activating factor receptor [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102685803, updated on 10-Mar-2024

Summary

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Gene symbol
ptafr
Gene description
platelet-activating factor receptor
See related
Ensembl:ENSLOCG00000018282
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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See ptafr in Genome Data Viewer
Location:
chromosome: LG6
Exon count:
2
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG6 NC_023184.1 (8242870..8248847)

Linkage Group LG6 - NC_023184.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 30B Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 8 Neighboring gene uncharacterized LOC107077539 Neighboring gene Fc receptor-like protein 3 Neighboring gene uncharacterized LOC107077538 Neighboring gene B-cell receptor CD22-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023184.1 Chromosome LG6 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled purinergic nucleotide receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables platelet activating factor receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
platelet-activating factor receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023184.1 Reference LepOcu1 Primary Assembly

    Range
    8242870..8248847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015348377.1 → XP_015203863.1  platelet-activating factor receptor isoform X1

    UniProtKB/TrEMBL
    W5NP24
    Conserved Domains (2) summary
    pfam00001
    Location:46 → 309
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:97 → 260
    7tm_4; Olfactory receptor

  2. XM_015348379.1 → XP_015203865.1  platelet-activating factor receptor isoform X2

    UniProtKB/TrEMBL
    W5NP24
    Related
    ENSLOCP00000022383.1, ENSLOCT00000022424.1
    Conserved Domains (1) summary
    pfam00001
    Location:33 → 296
    7tm_1; 7 transmembrane receptor (rhodopsin family)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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