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SYT17 synaptotagmin 17 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102576246, updated on 8-May-2024

Summary

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Gene symbol
SYT17
Gene description
synaptotagmin 17
See related
EnsemblRapid:ENSAMIG00015012362
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 13 NC_081836.1 (44993541..45072291, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017711568.1 (10021933..10100513, complement)

Chromosome 13 - NC_081836.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene C-type lectin domain containing 19A Neighboring gene ITPRIP like 2 Neighboring gene palmitoleoyl-protein carboxylesterase notum2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylserine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium-ion regulated exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to calcium ion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of calcium ion-dependent exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of dopamine secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081836.1 Reference rAllMis1 Primary Assembly

    Range
    44993541..45072291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006271980.4 → XP_006272042.2  synaptotagmin-17 isoform X1

    Related
    ENSAMIP00015015875.1, ENSAMIT00015022829.1
    Conserved Domains (2) summary
    cd08390
    Location:186 → 314
    C2A_Synaptotagmin-15-17; C2A domain first repeat present in Synaptotagmins 15 and 17
    cd08410
    Location:323 → 457
    C2B_Synaptotagmin-17; C2 domain second repeat present in Synaptotagmin 17

  2. XM_059716253.1 → XP_059572236.1  synaptotagmin-17 isoform X2

Nucleotide Protein
Heading Accession and Version

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