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EFNA5 ephrin A5 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102574357, updated on 10-Mar-2024

Summary

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Gene symbol
EFNA5
Gene description
ephrin A5
Locus tag
Y1Q_0004145
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
ephrin-A5
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 3 NC_081826.1 (231131211..231384598)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017707593.1 (25878572..26129983, complement)

Chromosome 3 - NC_081826.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132249143 Neighboring gene F-box and leucine rich repeat protein 17 Neighboring gene uncharacterized LOC109282391 Neighboring gene uncharacterized LOC132249574 Neighboring gene uncharacterized LOC132249575

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ephrin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ephrin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ephrin-A5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081826.1 Reference rAllMis1 Primary Assembly

    Range
    231131211..231384598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059724958.1 → XP_059580941.1  ephrin-A5 isoform X2

  2. XM_006264133.4 → XP_006264195.1  ephrin-A5 isoform X1

    UniProtKB/TrEMBL
    A0A151PIA9
    Conserved Domains (1) summary
    cd10425
    Location:30 → 159
    Ephrin-A_Ectodomain; Ectodomain of Ephrin A
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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