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SCAF8 SR-related CTD associated factor 8 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102573529, updated on 6-Jun-2024

Summary

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Gene symbol
SCAF8
Gene description
SR-related CTD associated factor 8
Locus tag
Y1Q_0009085
See related
EnsemblRapid:ENSAMIG00015019238
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See SCAF8 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 1 NC_081824.1 (133555010..133735560)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017714194.1 (794307..952384)

Chromosome 1 - NC_081824.1Genomic Context describing neighboring genes Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene CNKSR family member 3 Neighboring gene TIAM Rac1 associated GEF 2 Neighboring gene transcription factor B1, mitochondrial Neighboring gene claudin 20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SR-related and CTD-associated factor 8
Names
protein SCAF8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081824.1 Reference rAllMis1 Primary Assembly

    Range
    133555010..133735560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059714259.1 → XP_059570242.1  SR-related and CTD-associated factor 8 isoform X1

    UniProtKB/TrEMBL
    A0A151M263

  2. XM_059714278.1 → XP_059570261.1  SR-related and CTD-associated factor 8 isoform X1

    UniProtKB/TrEMBL
    A0A151M263

  3. XM_059714257.1 → XP_059570240.1  SR-related and CTD-associated factor 8 isoform X1

    UniProtKB/TrEMBL
    A0A151M263

  4. XM_059714288.1 → XP_059570271.1  SR-related and CTD-associated factor 8 isoform X2

    UniProtKB/TrEMBL
    A0A151M263

  5. XM_059714261.1 → XP_059570244.1  SR-related and CTD-associated factor 8 isoform X1

    UniProtKB/TrEMBL
    A0A151M263

  6. XM_059714270.1 → XP_059570253.1  SR-related and CTD-associated factor 8 isoform X1

    UniProtKB/TrEMBL
    A0A151M263

  7. XM_059714272.1 → XP_059570255.1  SR-related and CTD-associated factor 8 isoform X1

    UniProtKB/TrEMBL
    A0A151M263

  8. XM_059714306.1 → XP_059570289.1  SR-related and CTD-associated factor 8 isoform X5

    UniProtKB/TrEMBL
    A0A151M263
    Related
    ENSAMIP00015026205.1, ENSAMIT00015036495.1

  9. XM_059714304.1 → XP_059570287.1  SR-related and CTD-associated factor 8 isoform X4

    UniProtKB/TrEMBL
    A0A151M263

  10. XM_014596748.3 → XP_014452234.1  SR-related and CTD-associated factor 8 isoform X3

    UniProtKB/TrEMBL
    A0A151M263
    Related
    ENSAMIP00015026196.1, ENSAMIT00015036486.1
    Conserved Domains (3) summary
    COG0724
    Location:474 → 558
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd03562
    Location:4 → 125
    CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
    cd12462
    Location:476 → 554
    RRM_SCAF8; RNA recognition motif in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins
Nucleotide Protein
Heading Accession and Version

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