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PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102572668, updated on 10-Mar-2024

Summary

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Gene symbol
PAFAH1B1
Gene description
platelet activating factor acetylhydrolase 1b regulatory subunit 1
Locus tag
Y1Q_0007135
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 14 NC_081837.1 (7680158..7736367)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017711418.1 (9686514..9743061, complement)

Chromosome 14 - NC_081837.1Genomic Context describing neighboring genes Neighboring gene small G protein signaling modulator 2 Neighboring gene uncharacterized LOC109284587 Neighboring gene MAX network transcriptional repressor Neighboring gene clustered mitochondria homolog Neighboring gene RAP1 GTPase activating protein 2 Neighboring gene coiled-coil domain containing 92B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
platelet-activating factor acetylhydrolase IB subunit beta
Names
platelet-activating factor acetylhydrolase IB subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081837.1 Reference rAllMis1 Primary Assembly

    Range
    7680158..7736367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019493391.2 → XP_019348936.1  platelet-activating factor acetylhydrolase IB subunit beta

    UniProtKB/TrEMBL
    A0A151N5M3

  2. XM_006276443.4 → XP_006276505.1  platelet-activating factor acetylhydrolase IB subunit beta

    See identical proteins and their annotated locations for XP_006276505.1

    UniProtKB/TrEMBL
    A0A151N5M3
    Conserved Domains (4) summary
    COG2319
    Location:97 → 410
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08513
    Location:9 → 35
    LisH; LisH
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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