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SSH1 slingshot protein phosphatase 1 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102568609, updated on 6-Jun-2024

Summary

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Gene symbol
SSH1
Gene description
slingshot protein phosphatase 1
Locus tag
Y1Q_0018716
See related
EnsemblRapid:ENSAMIG00015010620
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 10 NC_081833.1 (4769016..4813863, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017709599.1 (10408016..10445074)

Chromosome 10 - NC_081833.1Genomic Context describing neighboring genes Neighboring gene selectin P ligand Neighboring gene coronin 1C Neighboring gene D-amino acid oxidase Neighboring gene SV2 related protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine/serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of actin filament polymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein phosphatase Slingshot homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081833.1 Reference rAllMis1 Primary Assembly

    Range
    4769016..4813863 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059713392.1 → XP_059569375.1  protein phosphatase Slingshot homolog 1 isoform X4

  2. XM_059713391.1 → XP_059569374.1  protein phosphatase Slingshot homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A151NS53
    Related
    ENSAMIP00015013429.1, ENSAMIT00015019391.1

  3. XM_019486769.2 → XP_019342314.1  protein phosphatase Slingshot homolog 1 isoform X3

    UniProtKB/TrEMBL
    A0A151NS53

  4. XM_019486768.2 → XP_019342313.1  protein phosphatase Slingshot homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A151NS53
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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