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FBXL20 F-box and leucine rich repeat protein 20 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102567642, updated on 6-Jun-2024

Summary

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Gene symbol
FBXL20
Gene description
F-box and leucine rich repeat protein 20
Locus tag
Y1Q_0012051
See related
EnsemblRapid:ENSAMIG00015023913
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
FBXL2
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 4 NC_081827.1 (165716716..165808809)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017708231.1 (992388..1078778)

Chromosome 4 - NC_081827.1Genomic Context describing neighboring genes Neighboring gene cyclin dependent kinase 12 Neighboring gene mediator complex subunit 1 Neighboring gene transcription factor CP2-like protein 1 Neighboring gene SH3 and cysteine rich domain 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box/LRR-repeat protein 20
Names
F-box/LRR-repeat protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081827.1 Reference rAllMis1 Primary Assembly

    Range
    165716716..165808809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059726993.1 → XP_059582976.1  F-box/LRR-repeat protein 20 isoform X3

    UniProtKB/TrEMBL
    A0A151P5Q1
    Related
    ENSAMIP00015032929.1, ENSAMIT00015045353.1

  2. XM_059726992.1 → XP_059582975.1  F-box/LRR-repeat protein 20 isoform X3

    UniProtKB/TrEMBL
    A0A151P5Q1

  3. XM_059726991.1 → XP_059582974.1  F-box/LRR-repeat protein 20 isoform X2

    UniProtKB/TrEMBL
    A0A151P5Q1
    Related
    ENSAMIP00015032921.1, ENSAMIT00015045345.1

  4. XM_019482544.2 → XP_019338089.1  F-box/LRR-repeat protein 20 isoform X4

    UniProtKB/TrEMBL
    A0A151P5Q1
    Related
    ENSAMIP00015032907.1, ENSAMIT00015045331.1
    Conserved Domains (3) summary
    sd00034
    Location:105 → 130
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:14 → 55
    F-box-like; F-box-like
    cl28166
    Location:206 → 380
    AMN1; Antagonist of mitotic exit network protein 1

  5. XM_059726990.1 → XP_059582973.1  F-box/LRR-repeat protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A151P5Q1
    Related
    ENSAMIP00015032892.1, ENSAMIT00015045316.1
Nucleotide Protein
Heading Accession and Version

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