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FBXL20 F-box and leucine rich repeat protein 20 [ Homo sapiens (human) ]

Gene ID: 84961, updated on 9-Nov-2022

Summary

Official Symbol
FBXL20provided by HGNC
Official Full Name
F-box and leucine rich repeat protein 20provided by HGNC
Primary source
HGNC:HGNC:24679
See related
Ensembl:ENSG00000108306 MIM:609086; AllianceGenome:HGNC:24679
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Fbl2; Fbl20
Summary
Members of the F-box protein family, such as FBXL20, are characterized by an approximately 40-amino acid F-box motif. SCF complexes, formed by SKP1 (MIM 601434), cullin (see CUL1; MIM 603134), and F-box proteins, act as protein-ubiquitin ligases. F-box proteins interact with SKP1 through the F box, and they interact with ubiquitination targets through other protein interaction domains (Jin et al., 2004 [PubMed 15520277]).[supplied by OMIM, Mar 2008]
Expression
Ubiquitous expression in testis (RPKM 3.5), brain (RPKM 3.2) and 25 other tissues See more
Orthologs
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Genomic context

See FBXL20 in Genome Data Viewer
Location:
17q12
Exon count:
17
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (39252663..39402556, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (40116582..40266468, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (37408916..37558809, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene transcription factor CP2-like Neighboring gene SH3 and cysteine rich domain 2 Neighboring gene microRNA 548BC Neighboring gene Sharpr-MPRA regulatory region 12086 Neighboring gene mediator complex subunit 1 Neighboring gene U6 spliceosomal RNA Neighboring gene cyclin dependent kinase 12

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ21037, MGC15482, DKFZp564O2364

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Schaffer collateral - CA1 synapse IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
F-box/LRR-repeat protein 20
Names
F-box protein FBL2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001184906.2NP_001171835.1  F-box/LRR-repeat protein 20 isoform 2

    See identical proteins and their annotated locations for NP_001171835.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an in-frame coding exon compared to variant 1. The resulting isoform (2) is shorter but has the same N- and C- termini compared to isoform 1.
    Source sequence(s)
    AC015910, DA747594, DQ223959
    Consensus CDS
    CCDS54116.1
    UniProtKB/Swiss-Prot
    Q96IG2
    Related
    ENSP00000377832.3, ENST00000394294.7
    Conserved Domains (3) summary
    cd09293
    Location:188362
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:119138
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:2869
    F-box-like
  2. NM_001370208.3NP_001357137.2  F-box/LRR-repeat protein 20 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC005288, AC015910
    UniProtKB/TrEMBL
    J3KTA1
    Related
    ENSP00000462878.1, ENST00000577399.5
  3. NM_001370209.3NP_001357138.2  F-box/LRR-repeat protein 20 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC005288, AC015910
  4. NM_032875.3NP_116264.2  F-box/LRR-repeat protein 20 isoform 1

    See identical proteins and their annotated locations for NP_116264.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform 1.
    Source sequence(s)
    AC015910, BC007557, DA747594
    Consensus CDS
    CCDS32640.1
    UniProtKB/Swiss-Prot
    Q38J52, Q96IG2
    Related
    ENSP00000264658.6, ENST00000264658.11
    Conserved Domains (3) summary
    cd09293
    Location:220394
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:119144
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:2869
    F-box-like

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    39252663..39402556 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047436952.1XP_047292908.1  F-box/LRR-repeat protein 20 isoform X1

  2. XM_047436951.1XP_047292907.1  F-box/LRR-repeat protein 20 isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    40116582..40266468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)