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VASN vasorin [ Alligator mississippiensis (American alligator) ]

Gene ID: 102565930, updated on 10-Mar-2024

Summary

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Gene symbol
VASN
Gene description
vasorin
Locus tag
Y1Q_0020349
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 13 NC_081836.1 (25056964..25088808)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017711331.1 (702688..734609)

Chromosome 13 - NC_081836.1Genomic Context describing neighboring genes Neighboring gene transcription factor AP-4 Neighboring gene GLIS family zinc finger 2 Neighboring gene mitochondrial import inner membrane translocase subunit TIM16 Neighboring gene uncharacterized LOC109284495 Neighboring gene DnaJ heat shock protein family (Hsp40) member A3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vasorin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081836.1 Reference rAllMis1 Primary Assembly

    Range
    25056964..25088808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006274738.4 → XP_006274800.1  vasorin

    UniProtKB/TrEMBL
    A0A151N6H3
    Conserved Domains (7) summary
    smart00013
    Location:20 → 53
    LRRNT; Leucine rich repeat N-terminal domain
    smart00082
    Location:295 → 347
    LRRCT; Leucine rich repeat C-terminal domain
    cd00054
    Location:419 → 447
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    sd00033
    Location:51 → 74
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:468 → 536
    fn3; Fibronectin type III domain
    pfam12799
    Location:73 → 114
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:52 → 109
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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