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PRDM2 PR/SET domain 2 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102561958, updated on 8-May-2024

Summary

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Gene symbol
PRDM2
Gene description
PR/SET domain 2
Locus tag
Y1Q_0009476
See related
EnsemblRapid:ENSAMIG00015016344
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See PRDM2 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 13 NC_081836.1 (6555191..6664852, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017713806.1 (132860..242040)

Chromosome 13 - NC_081836.1Genomic Context describing neighboring genes Neighboring gene nicotinamide N-methyltransferase-like Neighboring gene kazrin, periplakin interacting protein Neighboring gene uncharacterized LOC132244596 Neighboring gene leucine rich repeat containing 38 Neighboring gene uncharacterized LOC132244677 Neighboring gene uncharacterized LOC132244678 Neighboring gene podoplanin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 2
Names
PR domain-containing 2, with ZNF domain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081836.1 Reference rAllMis1 Primary Assembly

    Range
    6555191..6664852 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059716258.1 → XP_059572241.1  PR domain zinc finger protein 2 isoform X1

    Related
    ENSAMIP00015021780.1, ENSAMIT00015030837.1

  2. XM_059716259.1 → XP_059572242.1  PR domain zinc finger protein 2 isoform X2

    Related
    ENSAMIP00015021776.1, ENSAMIT00015030833.1

RNA

  1. XR_009456171.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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