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SOX8 SRY-box transcription factor 8 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102561095, updated on 8-May-2024

Summary

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Gene symbol
SOX8
Gene description
SRY-box transcription factor 8
Locus tag
Y1Q_0014333
See related
EnsemblRapid:ENSAMIG00015016281
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 13 NC_081836.1 (56363407..56371016, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017711567.1 (1299150..1305090, complement)

Chromosome 13 - NC_081836.1Genomic Context describing neighboring genes Neighboring gene somatostatin receptor 5 Neighboring gene uncharacterized LOC106738242 Neighboring gene lipase maturation factor 1 Neighboring gene uncharacterized LOC109284870

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in enteric nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in morphogenesis of an epithelium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peripheral nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-8
Names
SRY (sex determining region Y)-box 8
SRY-box 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081836.1 Reference rAllMis1 Primary Assembly

    Range
    56363407..56371016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006269155.4 → XP_006269217.1  transcription factor SOX-8

    UniProtKB/TrEMBL
    A0A151N207
    Related
    ENSAMIP00015021646.1, ENSAMIT00015030703.1
    Conserved Domains (2) summary
    cd01388
    Location:107 → 177
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam12444
    Location:21 → 97
    Sox_N; Sox developmental protein N terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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