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SGPP1 sphingosine-1-phosphate phosphatase 1 [ Vicugna pacos (alpaca) ]

Gene ID: 102535101, updated on 10-Mar-2024

Summary

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Gene symbol
SGPP1
Gene description
sphingosine-1-phosphate phosphatase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 6 Unlocalized Scaffold NW_021964165.1 (31261300..31294667, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882766.1 (7430346..7463719)

NW_021964165.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116280981 Neighboring gene WD repeat domain 89 Neighboring gene nucleolar protein 56 pseudogene Neighboring gene spectrin repeat containing nuclear envelope protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine-1-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate phosphatase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964165.1 Reference VicPac3.1 Primary Assembly

    Range
    31261300..31294667 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006206998.2 → XP_006207060.2  sphingosine-1-phosphate phosphatase 1

    UniProtKB/TrEMBL
    A0A6I9ICK0
    Conserved Domains (1) summary
    cd03388
    Location:1 → 105
    PAP2_SPPase1; PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second ...
Nucleotide Protein
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