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BCAN brevican [ Vicugna pacos (alpaca) ]

Gene ID: 102532148, updated on 10-Mar-2024

Summary

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Gene symbol
BCAN
Gene description
brevican
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
16
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 21 Unlocalized Scaffold NW_021964201.1 (8002275..8019694)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882899.1 (419340..436751, complement)

NW_021964201.1Genomic Context describing neighboring genes Neighboring gene G-patch domain containing 4 Neighboring gene hyaluronan and proteoglycan link protein 2 Neighboring gene nestin Neighboring gene cellular retinoic acid binding protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
brevican core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964201.1 Reference VicPac3.1 Primary Assembly

    Range
    8002275..8019694
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031689149.1 → XP_031545009.1  brevican core protein isoform X3

    UniProtKB/TrEMBL
    A0A6J3BFJ0
    Conserved Domains (4) summary
    cd03517
    Location:157 → 251
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:258 → 353
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    pfam15449
    Location:478 → 611
    Retinal; Retinal protein
    cl11960
    Location:49 → 158
    Ig; Immunoglobulin domain

  2. XM_031689148.1 → XP_031545008.1  brevican core protein isoform X1

    UniProtKB/TrEMBL
    A0A6J0AZT6
    Conserved Domains (7) summary
    cd00033
    Location:816 → 873
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PLN03209
    Location:493 → 659
    PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
    cd03517
    Location:157 → 251
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:258 → 353
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    pfam00008
    Location:651 → 680
    EGF; EGF-like domain
    cl02432
    Location:689 → 812
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl11960
    Location:49 → 158
    Ig; Immunoglobulin domain

  3. XM_031689147.1 → XP_031545007.1  brevican core protein isoform X1

    UniProtKB/TrEMBL
    A0A6J0AZT6
    Conserved Domains (7) summary
    cd00033
    Location:816 → 873
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PLN03209
    Location:493 → 659
    PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
    cd03517
    Location:157 → 251
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:258 → 353
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    pfam00008
    Location:651 → 680
    EGF; EGF-like domain
    cl02432
    Location:689 → 812
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl11960
    Location:49 → 158
    Ig; Immunoglobulin domain

  4. XM_015248288.2 → XP_015103774.1  brevican core protein isoform X2

    UniProtKB/TrEMBL
    A0A6J0AZU1
    Conserved Domains (7) summary
    cd00033
    Location:802 → 859
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PLN03209
    Location:479 → 645
    PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
    cd03517
    Location:157 → 251
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:258 → 353
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    pfam00008
    Location:637 → 666
    EGF; EGF-like domain
    cl02432
    Location:675 → 798
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl11960
    Location:49 → 158
    Ig; Immunoglobulin domain

  5. XM_015248283.2 → XP_015103769.1  brevican core protein isoform X1

    UniProtKB/TrEMBL
    A0A6J0AZT6
    Conserved Domains (7) summary
    cd00033
    Location:816 → 873
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PLN03209
    Location:493 → 659
    PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
    cd03517
    Location:157 → 251
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:258 → 353
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    pfam00008
    Location:651 → 680
    EGF; EGF-like domain
    cl02432
    Location:689 → 812
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl11960
    Location:49 → 158
    Ig; Immunoglobulin domain

  6. XM_015248284.2 → XP_015103770.1  brevican core protein isoform X1

    UniProtKB/TrEMBL
    A0A6J0AZT6
    Conserved Domains (7) summary
    cd00033
    Location:816 → 873
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PLN03209
    Location:493 → 659
    PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
    cd03517
    Location:157 → 251
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:258 → 353
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    pfam00008
    Location:651 → 680
    EGF; EGF-like domain
    cl02432
    Location:689 → 812
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl11960
    Location:49 → 158
    Ig; Immunoglobulin domain

  7. XM_015248285.2 → XP_015103771.1  brevican core protein isoform X1

    UniProtKB/TrEMBL
    A0A6J0AZT6
    Conserved Domains (7) summary
    cd00033
    Location:816 → 873
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PLN03209
    Location:493 → 659
    PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
    cd03517
    Location:157 → 251
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:258 → 353
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    pfam00008
    Location:651 → 680
    EGF; EGF-like domain
    cl02432
    Location:689 → 812
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl11960
    Location:49 → 158
    Ig; Immunoglobulin domain

  8. XM_015248286.2 → XP_015103772.1  brevican core protein isoform X1

    UniProtKB/TrEMBL
    A0A6J0AZT6
    Conserved Domains (7) summary
    cd00033
    Location:816 → 873
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PLN03209
    Location:493 → 659
    PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
    cd03517
    Location:157 → 251
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:258 → 353
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    pfam00008
    Location:651 → 680
    EGF; EGF-like domain
    cl02432
    Location:689 → 812
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl11960
    Location:49 → 158
    Ig; Immunoglobulin domain

  9. XM_015248287.2 → XP_015103773.1  brevican core protein isoform X1

    UniProtKB/TrEMBL
    A0A6J0AZT6
    Conserved Domains (7) summary
    cd00033
    Location:816 → 873
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PLN03209
    Location:493 → 659
    PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
    cd03517
    Location:157 → 251
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:258 → 353
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    pfam00008
    Location:651 → 680
    EGF; EGF-like domain
    cl02432
    Location:689 → 812
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl11960
    Location:49 → 158
    Ig; Immunoglobulin domain
Nucleotide Protein
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