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TPM3 tropomyosin 3 [ Vicugna pacos (alpaca) ]

Gene ID: 102531911, updated on 10-Mar-2024

Summary

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Gene symbol
TPM3
Gene description
tropomyosin 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See TPM3 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
13
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 21 Unlocalized Scaffold NW_021964201.1 (6283538..6309811, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882899.1 (2129794..2156056)

NW_021964201.1Genomic Context describing neighboring genes Neighboring gene nucleoporin 210 like Neighboring gene ribosomal protein S27 Neighboring gene heterogeneous nuclear ribonucleoprotein D-like pseudogene Neighboring gene chromosome 21 C1orf43 homolog Neighboring gene cilia and flagella associated protein 141

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tropomyosin alpha-3 chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964201.1 Reference VicPac3.1 Primary Assembly

    Range
    6283538..6309811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006214695.3 → XP_006214757.1  tropomyosin alpha-3 chain isoform X6

    See identical proteins and their annotated locations for XP_006214757.1

    UniProtKB/TrEMBL
    A0A6I9IND1
    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  2. XM_015248253.2 → XP_015103739.1  tropomyosin alpha-3 chain isoform X5

    UniProtKB/TrEMBL
    A0A6I9INF3
    Conserved Domains (2) summary
    pfam00261
    Location:48 → 282
    Tropomyosin
    pfam16526
    Location:13 → 72
    CLZ; C-terminal leucine zipper domain of cyclic nucleotide-gated channels

  3. XM_015248252.2 → XP_015103738.1  tropomyosin alpha-3 chain isoform X3

    UniProtKB/TrEMBL
    A0A6J0AVH6
    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  4. XM_015248250.2 → XP_015103736.1  tropomyosin alpha-3 chain isoform X2

    UniProtKB/TrEMBL
    A0A6J0AW76
    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  5. XM_006214697.3 → XP_006214759.1  tropomyosin alpha-3 chain isoform X9

    See identical proteins and their annotated locations for XP_006214759.1

    UniProtKB/TrEMBL
    A0A6I9IKW4
    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin

  6. XM_015248255.2 → XP_015103741.1  tropomyosin alpha-3 chain isoform X8

    UniProtKB/TrEMBL
    A0A6J0AY04
    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin

  7. XM_006214698.3 → XP_006214760.1  tropomyosin alpha-3 chain isoform X11

    See identical proteins and their annotated locations for XP_006214760.1

    UniProtKB/TrEMBL
    A0A6I9INF8
    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin

  8. XM_006214703.3 → XP_006214765.1  tropomyosin alpha-3 chain isoform X13

    See identical proteins and their annotated locations for XP_006214765.1

    UniProtKB/TrEMBL
    A0A6I9IKS8
    Conserved Domains (1) summary
    pfam00261
    Location:22 → 180
    Tropomyosin

  9. XM_006214696.3 → XP_006214758.1  tropomyosin alpha-3 chain isoform X12

    See identical proteins and their annotated locations for XP_006214758.1

    UniProtKB/TrEMBL
    A0A6I9IJN8
    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin

  10. XM_006214693.3 → XP_006214755.2  tropomyosin alpha-3 chain isoform X4

    UniProtKB/TrEMBL
    A0A6I9INF3
    Conserved Domains (2) summary
    pfam00261
    Location:48 → 282
    Tropomyosin
    pfam16526
    Location:13 → 72
    CLZ; C-terminal leucine zipper domain of cyclic nucleotide-gated channels

  11. XM_015248254.2 → XP_015103740.1  tropomyosin alpha-3 chain isoform X7

    UniProtKB/TrEMBL
    A0A6J0AY04
    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin

  12. XM_015248256.2 → XP_015103742.1  tropomyosin alpha-3 chain isoform X10

    UniProtKB/TrEMBL
    A0A6I9INF8
    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin

  13. XM_006214694.3 → XP_006214756.1  tropomyosin alpha-3 chain isoform X1

    See identical proteins and their annotated locations for XP_006214756.1

    UniProtKB/TrEMBL
    A0A6J0AW76
    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin
Nucleotide Protein
Heading Accession and Version

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