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TRPS1 transcriptional repressor GATA binding 1 [ Vicugna pacos (alpaca) ]

Gene ID: 102531401, updated on 10-Mar-2024

Summary

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Gene symbol
TRPS1
Gene description
transcriptional repressor GATA binding 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 25
Exon count:
8
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 25 Unlocalized Scaffold NW_021964208.1 (19224760..19464191, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882820.1 (2936623..3174543, complement)

NW_021964208.1Genomic Context describing neighboring genes Neighboring gene 28S ribosomal protein S31, mitochondrial pseudogene Neighboring gene CUB and Sushi multiple domains 3 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC116285608 Neighboring gene uncharacterized LOC116285607 Neighboring gene uncharacterized LOC116285609 Neighboring gene eukaryotic translation initiation factor 3 subunit H Neighboring gene UTP23 small subunit processome component

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger transcription factor Trps1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964208.1 Reference VicPac3.1 Primary Assembly

    Range
    19224760..19464191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006210933.3 → XP_006210995.1  zinc finger transcription factor Trps1 isoform X3

    UniProtKB/TrEMBL
    A0A6I9IHZ7
    Conserved Domains (1) summary
    cd00202
    Location:894 → 950
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  2. XM_006210934.3 → XP_006210996.1  zinc finger transcription factor Trps1 isoform X2

    UniProtKB/TrEMBL
    A0A6I9IFB5
    Conserved Domains (1) summary
    cd00202
    Location:896 → 952
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  3. XM_006210932.3 → XP_006210994.1  zinc finger transcription factor Trps1 isoform X1

    UniProtKB/TrEMBL
    A0A6I9IG28
    Conserved Domains (1) summary
    cd00202
    Location:903 → 959
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  4. XM_031691264.1 → XP_031547124.1  zinc finger transcription factor Trps1 isoform X4

    UniProtKB/TrEMBL
    A0A6J3BLJ4
    Conserved Domains (1) summary
    cd00202
    Location:890 → 946
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Nucleotide Protein
Heading Accession and Version

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