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CXXC5 CXXC finger protein 5 [ Vicugna pacos (alpaca) ]

Gene ID: 102528258, updated on 10-Mar-2024

Summary

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Gene symbol
CXXC5
Gene description
CXXC finger protein 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 3 Unlocalized Scaffold NW_021964158.1 (9473633..9507858, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882746.1 (9451065..9484635, complement)

NW_021964158.1Genomic Context describing neighboring genes Neighboring gene pleckstrin and Sec7 domain containing 2 Neighboring gene uncharacterized LOC107033548 Neighboring gene uncharacterized LOC116277816 Neighboring gene uncharacterized LOC116277807 Neighboring gene ubiquitin conjugating enzyme E2 D2 Neighboring gene stimulator of interferon response cGAMP interactor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methyl-CpG binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CXXC-type zinc finger protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964158.1 Reference VicPac3.1 Primary Assembly

    Range
    9473633..9507858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015239500.2 → XP_015094986.1  CXXC-type zinc finger protein 5

    UniProtKB/TrEMBL
    A0A6J3A684
    Conserved Domains (1) summary
    pfam02008
    Location:252 → 293
    zf-CXXC; CXXC zinc finger domain

  2. XM_031672481.1 → XP_031528341.1  CXXC-type zinc finger protein 5

    UniProtKB/TrEMBL
    A0A6J3A684
    Conserved Domains (1) summary
    pfam02008
    Location:252 → 293
    zf-CXXC; CXXC zinc finger domain

  3. XM_006204566.3 → XP_006204628.1  CXXC-type zinc finger protein 5

    UniProtKB/TrEMBL
    A0A6J3A684
    Conserved Domains (1) summary
    pfam02008
    Location:252 → 293
    zf-CXXC; CXXC zinc finger domain
Nucleotide Protein
Heading Accession and Version

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