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HELLS helicase, lymphoid specific [ Tupaia chinensis (Chinese tree shrew) ]

Gene ID: 102500960, updated on 11-Apr-2024

Summary

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Gene symbol
HELLS
Gene description
helicase, lymphoid specific
Locus tag
TREES_T100006512
Gene type
protein coding
RefSeq status
MODEL
Organism
Tupaia chinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006159692.1 (6323856..6366485)

NW_006159692.1Genomic Context describing neighboring genes Neighboring gene elongation factor 1-alpha 1 pseudogene Neighboring gene NOC3 like DNA replication regulator Neighboring gene TBC1 domain family member 12 Neighboring gene U5 spliceosomal RNA Neighboring gene cytochrome P450 2C19 Neighboring gene cytochrome P450 2C3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006159692 Unplaced Scaffold Reference TupChi_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA methylation-dependent heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lymphocyte proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of gene expression via chromosomal CpG island methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pericentric heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of pericentric heterochromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lymphoid-specific helicase
Names
Lymphoid-specific helicase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TupChi_1.0

Genomic

  1. NW_006159692.1 Reference TupChi_1.0

    Range
    6323856..6366485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014587539.2 → XP_014443025.1  lymphoid-specific helicase

    Conserved Domains (3) summary
    cd00046
    Location:240 → 382
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:223 → 574
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:595 → 709
    Helicase_C; Helicase conserved C-terminal domain
Nucleotide Protein
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