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NXF1 nuclear RNA export factor 1 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102446109, updated on 10-Mar-2024

Summary

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Gene symbol
NXF1
Gene description
nuclear RNA export factor 1
See related
Ensembl:ENSPSIG00000006185
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005853743.1 (321452..334117)

NW_005853743.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 74 Neighboring gene syntaxin 5 Neighboring gene serine/threonine-protein kinase D3-like Neighboring gene transmembrane protein 223

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005853743 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear RNA export factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005853743.1 Reference PelSin_1.0 Primary Assembly

    Range
    321452..334117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025182199.1 → XP_025037984.1  nuclear RNA export factor 1

    UniProtKB/TrEMBL
    K7FFR9
    Related
    ENSPSIP00000006879.1, ENSPSIT00000006918.1
    Conserved Domains (5) summary
    smart00804
    Location:565 → 627
    TAP_C; C-terminal domain of vertebrate Tap protein
    sd00035
    Location:234 → 276
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam09162
    Location:126 → 207
    Tap-RNA_bind; Tap, RNA-binding
    pfam13855
    Location:275 → 337
    LRR_8; Leucine rich repeat
    cl09109
    Location:392 → 545
    NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of ...
Nucleotide Protein
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