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RAB40C RAB40C, member RAS oncogene family [ Myotis lucifugus (little brown bat) ]

Gene ID: 102442932, updated on 30-Mar-2024

Summary

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Gene symbol
RAB40C
Gene description
RAB40C, member RAS oncogene family
See related
Ensembl:ENSMLUG00000010258
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis lucifugus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Myoluc2.0 (GCF_000147115.1) Unplaced Scaffold NW_005871546.1 (121582..154131, complement)

NW_005871546.1Genomic Context describing neighboring genes Neighboring gene methyltransferase like 26 Neighboring gene WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class Q Neighboring gene NHL repeat containing 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871546 Unplaced Scaffold Reference Myoluc2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-40C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis lucifugus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Myoluc2.0

Genomic

  1. NW_005871546.1 Reference Myoluc2.0

    Range
    121582..154131 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006103657.3 → XP_006103719.1  ras-related protein Rab-40C isoform X1

    See identical proteins and their annotated locations for XP_006103719.1

    UniProtKB/TrEMBL
    G1PFJ3
    Conserved Domains (2) summary
    cd04121
    Location:9 → 281
    Rab40; Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c
    cd03742
    Location:187 → 229
    SOCS_Rab40; SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as ...

  2. XM_006103658.3 → XP_006103720.1  ras-related protein Rab-40C isoform X1

    See identical proteins and their annotated locations for XP_006103720.1

    UniProtKB/TrEMBL
    G1PFJ3
    Conserved Domains (2) summary
    cd04121
    Location:9 → 281
    Rab40; Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c
    cd03742
    Location:187 → 229
    SOCS_Rab40; SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as ...

  3. XM_023744913.1 → XP_023600681.1  ras-related protein Rab-40C isoform X1

    UniProtKB/TrEMBL
    G1PFJ3
    Related
    ENSMLUP00000009348.2, ENSMLUT00000010259.2
    Conserved Domains (2) summary
    cd04121
    Location:9 → 281
    Rab40; Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c
    cd03742
    Location:187 → 229
    SOCS_Rab40; SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as ...

  4. XM_023744916.1 → XP_023600684.1  ras-related protein Rab-40C isoform X3

    Conserved Domains (2) summary
    cd03742
    Location:148 → 190
    SOCS_Rab40; SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as ...
    cl21455
    Location:47 → 242
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  5. XM_023744915.1 → XP_023600683.1  ras-related protein Rab-40C isoform X2

    UniProtKB/TrEMBL
    G1PFJ3
    Conserved Domains (2) summary
    cd03742
    Location:148 → 190
    SOCS_Rab40; SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as ...
    cl21455
    Location:9 → 242
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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