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COL4A6 collagen type IV alpha 6 chain [ Myotis lucifugus (little brown bat) ]

Gene ID: 102420284, updated on 30-Mar-2024

Summary

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Gene symbol
COL4A6
Gene description
collagen type IV alpha 6 chain
See related
Ensembl:ENSMLUG00000014546
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis lucifugus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
47
Annotation release Status Assembly Chr Location
102 current Myoluc2.0 (GCF_000147115.1) Unplaced Scaffold NW_005871050.1 (27378127..27752410)

NW_005871050.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S20 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene collagen type IV alpha 5 chain Neighboring gene sorting nexin-15 pseudogene Neighboring gene autophagy related 4A cysteine peptidase Neighboring gene proteasome 26S subunit, non-ATPase 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871050 Unplaced Scaffold Reference Myoluc2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: collagen alpha-6(IV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis lucifugus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Myoluc2.0

Genomic

  1. NW_005871050.1 Reference Myoluc2.0

    Range
    27378127..27752410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023758663.1 → XP_023614431.1  LOW QUALITY PROTEIN: collagen alpha-6(IV) chain

    Related
    ENSMLUP00000013250.2, ENSMLUT00000014564.2
    Conserved Domains (3) summary
    pfam01391
    Location:1036 → 1094
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1597 → 1709
    C4; C-terminal tandem repeated domain in type 4 procollagen
    pfam09606
    Location:708 → 1110
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
Nucleotide Protein
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