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PRICKLE3 prickle planar cell polarity protein 3 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102408823, updated on 10-Mar-2024

Summary

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Gene symbol
PRICKLE3
Gene description
prickle planar cell polarity protein 3
See related
EnsemblRapid:ENSBALG00030020959
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See PRICKLE3 in Genome Data Viewer
Location:
chromosome: X
Exon count:
9
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) X NC_059181.1 (55526723..55535909)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) X NC_058367.1 (57084180..57093366)

Chromosome X - NC_059181.1Genomic Context describing neighboring genes Neighboring gene calcium voltage-gated channel subunit alpha1 F Neighboring gene synaptophysin Neighboring gene proteolipid protein 2 Neighboring gene translation initiation factor IF-2 Neighboring gene MAGI family member, X-linked Neighboring gene uncharacterized LOC123331994

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prickle planar cell polarity protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059181.1 Reference NDDB_SH_1 Primary Assembly

    Range
    55526723..55535909
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006073658.4 → XP_006073720.1  prickle planar cell polarity protein 3 isoform X1

    Related
    ENSBALP00030039415.1, ENSBALT00030058634.1
    Conserved Domains (4) summary
    cd09415
    Location:186 → 244
    LIM1_Prickle; The first LIM domain of Prickle
    cd09418
    Location:249 → 304
    LIM2_Prickle; The second LIM domain of Prickle
    cd09420
    Location:309 → 367
    LIM3_Prickle; The third LIM domain of Prickle
    cd09827
    Location:82 → 178
    PET_Prickle; The PET domain of Prickle

  2. XM_006073657.4 → XP_006073719.1  prickle planar cell polarity protein 3 isoform X2

    Related
    ENSBALP00030039388.1, ENSBALT00030058592.1
    Conserved Domains (3) summary
    cd09415
    Location:186 → 244
    LIM1_Prickle; The first LIM domain of Prickle
    cd09418
    Location:249 → 304
    LIM2_Prickle; The second LIM domain of Prickle
    cd09827
    Location:82 → 178
    PET_Prickle; The PET domain of Prickle
Nucleotide Protein
Heading Accession and Version

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