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NCAM2 neural cell adhesion molecule 2 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102406748, updated on 10-Mar-2024

Summary

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Gene symbol
NCAM2
Gene description
neural cell adhesion molecule 2
See related
EnsemblRapid:ENSBALG00030031630
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
19
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 1 NC_059157.1 (60484049..61059502, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 1 NC_058343.1 (59930390..60505884, complement)

Chromosome 1 - NC_059157.1Genomic Context describing neighboring genes Neighboring gene endoplasmin-like Neighboring gene ATP-binding cassette sub-family F member 2-like Neighboring gene uncharacterized LOC123465592 Neighboring gene ribosomal protein S6 kinase beta-1-like Neighboring gene mitochondrial import receptor subunit TOM20 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059157.1 Reference NDDB_SH_1 Primary Assembly

    Range
    60484049..61059502 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025282108.3 → XP_025137893.1  neural cell adhesion molecule 2 isoform X1

    Related
    ENSBALP00030057940.1, ENSBALT00030087259.1
    Conserved Domains (7) summary
    cd05866
    Location:21 → 112
    Ig1_NCAM-2; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2
    cd05870
    Location:300 → 397
    Ig_NCAM-2; Immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)
    smart00409
    Location:413 → 490
    IG; Immunoglobulin
    cd00063
    Location:496 → 588
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:594 → 678
    fn3; Fibronectin type III domain
    pfam13927
    Location:122 → 187
    Ig_3; Immunoglobulin domain
    cl11960
    Location:208 → 301
    Ig; Immunoglobulin domain

  2. XM_025282115.2 → XP_025137900.1  neural cell adhesion molecule 2 isoform X2

    Conserved Domains (6) summary
    cd05866
    Location:21 → 112
    Ig1_NCAM-2; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2
    cd05870
    Location:300 → 397
    Ig_NCAM-2; Immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)
    cd00063
    Location:496 → 588
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:594 → 678
    fn3; Fibronectin type III domain
    pfam13927
    Location:401 → 479
    Ig_3; Immunoglobulin domain
    cl11960
    Location:208 → 301
    Ig; Immunoglobulin domain
Nucleotide Protein
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