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POU2AF3 POU class 2 homeobox associating factor 3 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102398988, updated on 10-Mar-2024

Summary

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Gene symbol
POU2AF3
Gene description
POU class 2 homeobox associating factor 3
See related
EnsemblRapid:ENSBALG00030017117
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Also known as
COLCA2
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 16 NC_059172.1 (63917766..63927269, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 16 NC_058358.1 (63477932..63487576, complement)

Chromosome 16 - NC_059172.1Genomic Context describing neighboring genes Neighboring gene POU class 2 homeobox associating factor 1 Neighboring gene uncharacterized LOC123329825 Neighboring gene uncharacterized LOC112579384 Neighboring gene POU class 2 homeobox associating factor 2 Neighboring gene NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables POU domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
colorectal cancer-associated protein 2
Names
colorectal cancer associated 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059172.1 Reference NDDB_SH_1 Primary Assembly

    Range
    63917766..63927269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006074561.4 → XP_006074623.4  colorectal cancer-associated protein 2

    Related
    ENSBALP00030032321.1, ENSBALT00030048035.1
Nucleotide Protein
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