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Colca2 COLCA2 homolog [ Mus musculus (house mouse) ]

Gene ID: 100502940, updated on 31-Jan-2019

Summary

Official Symbol
Colca2provided by MGI
Official Full Name
COLCA2 homologprovided by MGI
Primary source
MGI:MGI:2685530
See related
Ensembl:ENSMUSG00000079559
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm684
Expression
Broad expression in lung adult (RPKM 3.3), genital fat pad adult (RPKM 3.2) and 21 other tissues See more
Orthologs

Genomic context

See Colca2 in Genome Data Viewer
Location:
9; 9 A5.3
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (51270258..51278990, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (51078363..51086470, complement)

Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 32742 Neighboring gene POU domain, class 2, associating factor 1 Neighboring gene uncharacterized LOC102635638 Neighboring gene RIKEN cDNA 1810046K07 gene Neighboring gene predicted gene, 32819 Neighboring gene predicted gene, 39338

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Transgenic (1) 
  • Targeted (1) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
colorectal cancer-associated protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195681.1NP_001182610.1  colorectal cancer-associated protein 2

    See identical proteins and their annotated locations for NP_001182610.1

    Status: PROVISIONAL

    Source sequence(s)
    AC160052, BM935103
    Consensus CDS
    CCDS57676.1
    UniProtKB/TrEMBL
    F8VPY8
    Related
    ENSMUSP00000110070.3, ENSMUST00000114427.3

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

    Range
    51270258..51278990 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006509895.3XP_006509958.1  colorectal cancer-associated protein 2 isoform X2

    See identical proteins and their annotated locations for XP_006509958.1

    UniProtKB/TrEMBL
    F8VPY8
    Related
    ENSMUSP00000150539.1, ENSMUST00000215038.1
  2. XM_006509896.3XP_006509959.1  colorectal cancer-associated protein 2 isoform X2

    See identical proteins and their annotated locations for XP_006509959.1

    UniProtKB/TrEMBL
    F8VPY8
  3. XM_011242373.2XP_011240675.1  colorectal cancer-associated protein 2 isoform X1

  4. XM_011242374.1XP_011240676.1  colorectal cancer-associated protein 2 isoform X3

    See identical proteins and their annotated locations for XP_011240676.1

  5. XM_011242375.1XP_011240677.1  colorectal cancer-associated protein 2 isoform X3

    See identical proteins and their annotated locations for XP_011240677.1

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