U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

EPHB6 EPH receptor B6 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102398020, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
EPHB6
Gene description
EPH receptor B6
See related
EnsemblRapid:ENSBALG00030028081
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 8
Exon count:
18
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 8 NC_059164.1 (105714500..105731051)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 8 NC_058350.1 (104477680..104494229)

Chromosome 8 - NC_059164.1Genomic Context describing neighboring genes Neighboring gene T cell receptor beta variable 30-like Neighboring gene uncharacterized LOC123334908 Neighboring gene transient receptor potential cation channel subfamily V member 6 Neighboring gene transient receptor potential cation channel subfamily V member 5

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane-ephrin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system projection neuron axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ephrin type-B receptor 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059164.1 Reference NDDB_SH_1 Primary Assembly

    Range
    105714500..105731051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025291717.2 → XP_025147502.1  ephrin type-B receptor 6 isoform X1

    Related
    ENSBALP00030052324.1, ENSBALT00030078088.1
    Conserved Domains (6) summary
    cd10475
    Location:34 → 222
    EphR_LBD_B6; Ligand Binding Domain of Ephrin type-B Receptor 6
    cd00185
    Location:292 → 359
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
    pfam00041
    Location:476 → 558
    fn3; Fibronectin type III domain
    pfam14575
    Location:599 → 651
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
    cl15755
    Location:932 → 1000
    SAM_superfamily; SAM (Sterile alpha motif )
    cl21453
    Location:652 → 906
    PKc_like; Protein Kinases, catalytic domain

  2. XM_025291719.2 → XP_025147504.1  ephrin type-B receptor 6 isoform X1

    Related
    ENSBALP00030052338.1, ENSBALT00030078111.1
    Conserved Domains (6) summary
    cd10475
    Location:34 → 222
    EphR_LBD_B6; Ligand Binding Domain of Ephrin type-B Receptor 6
    cd00185
    Location:292 → 359
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
    pfam00041
    Location:476 → 558
    fn3; Fibronectin type III domain
    pfam14575
    Location:599 → 651
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
    cl15755
    Location:932 → 1000
    SAM_superfamily; SAM (Sterile alpha motif )
    cl21453
    Location:652 → 906
    PKc_like; Protein Kinases, catalytic domain

  3. XM_006051544.3 → XP_006051606.1  ephrin type-B receptor 6 isoform X1

    Conserved Domains (6) summary
    cd10475
    Location:34 → 222
    EphR_LBD_B6; Ligand Binding Domain of Ephrin type-B Receptor 6
    cd00185
    Location:292 → 359
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
    pfam00041
    Location:476 → 558
    fn3; Fibronectin type III domain
    pfam14575
    Location:599 → 651
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
    cl15755
    Location:932 → 1000
    SAM_superfamily; SAM (Sterile alpha motif )
    cl21453
    Location:652 → 906
    PKc_like; Protein Kinases, catalytic domain

  4. XM_044946996.1 → XP_044802931.1  ephrin type-B receptor 6 isoform X2

    Conserved Domains (4) summary
    cd00063
    Location:191 → 282
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00185
    Location:8 → 75
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
    cl15755
    Location:648 → 716
    SAM_superfamily; SAM (Sterile alpha motif )
    cl21453
    Location:368 → 622
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.