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ITPR1 inositol 1,4,5-trisphosphate receptor type 1 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102379206, updated on 11-Apr-2024

Summary

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Gene symbol
ITPR1
Gene description
inositol 1,4,5-trisphosphate receptor type 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See ITPR1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
59
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842204.1 (320225..539874, complement)

NW_005842204.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102379042 Neighboring gene uncharacterized LOC112550780 Neighboring gene uncharacterized LOC112550779 Neighboring gene sulfatase modifying factor 1 Neighboring gene uncharacterized LOC112550781 Neighboring gene histone-lysine N-methyltransferase SETMAR

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842204 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol 1,4,5 trisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inositol 1,4,5-trisphosphate-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inositol 1,4,5-trisphosphate receptor type 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842204.1 Reference ASM45574v1 Primary Assembly

    Range
    320225..539874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025207692.1 → XP_025063477.1  inositol 1,4,5-trisphosphate receptor type 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0GVK6
    Conserved Domains (5) summary
    pfam00520
    Location:2319 → 2572
    Ion_trans; Ion transport protein
    pfam01365
    Location:474 → 670
    RYDR_ITPR; RIH domain
    pfam02815
    Location:232 → 433
    MIR; MIR domain
    pfam08454
    Location:1933 → 2038
    RIH_assoc; RyR and IP3R Homology associated
    pfam08709
    Location:4 → 225
    Ins145_P3_rec; Inositol 1,4,5-trisphosphate/ryanodine receptor

  2. XM_014521334.2 → XP_014376820.1  inositol 1,4,5-trisphosphate receptor type 1 isoform X2

    UniProtKB/TrEMBL
    A0A1U8DHX3
    Conserved Domains (6) summary
    smart00472
    Location:231 → 287
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    pfam00520
    Location:2286 → 2548
    Ion_trans; Ion transport protein
    pfam01365
    Location:461 → 650
    RYDR_ITPR; RIH domain
    pfam02815
    Location:232 → 418
    MIR; MIR domain
    pfam08454
    Location:1909 → 2014
    RIH_assoc; RyR and IP3R Homology associated
    pfam08709
    Location:4 → 225
    Ins145_P3_rec; Inositol 1,4,5-trisphosphate/ryanodine receptor
Nucleotide Protein
Heading Accession and Version

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